C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, heavy chain 11, smooth muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396324 MYH11-006 ENSG00000133392 9606 - 16:15703172-15857011 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000396324
Transcript ID Adipose Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000396324 66.229±0.00 5.497±0.00 25.745±7.25 3.930±3.22 25.415±0.00 86.284±0.00 15.913±0.00 139.053±0.00 35.178±23.47 33.246±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UO CIL_0006UO_0001 CGP 16:15594386-15726353
CIL_0006MU CIL_0006MU_0001 CGP 16:15643267-15857033
CIL_0002TD CIL_0002TD_0001 CGP 16:15703135-15888625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003774 IEA motor activity
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0005859 IEA muscle myosin complex
GO:0006936 TAS muscle contraction
GO:0006939 ISS smooth muscle contraction
GO:0007411 TAS axon guidance
GO:0008152 IEA metabolic process
GO:0008307 IMP structural constituent of muscle
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0030241 ISS skeletal muscle myosin thick filament assembly
GO:0030485 IEA smooth muscle contractile fiber
GO:0032982 IEA myosin filament
GO:0048251 IMP elastic fiber assembly
GO:0048739 IMP cardiac muscle fiber development
GO:0051015 IEA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090287 Myh11-201 protein_coding Mus_musculus 0 6855
ENSDART00000041142 myh11a-001 protein_coding Danio_rerio 0 2813
ENSMUST00000016771 Myh9-001 protein_coding Mus_musculus 0 2787
ENSMUST00000092984 Myh10-008 protein_coding Mus_musculus 0 2499
ENSMUST00000102611 Myh10-001 protein_coding Mus_musculus 0 2499
ENSDART00000150939 myh10-002 protein_coding Danio_rerio 0 2386
ENSDART00000137105 myh9b-001 protein_coding Danio_rerio 0 2316
ENSDART00000046359 myh10-201 protein_coding Danio_rerio 0 2060
ENSDART00000151114 myh10-001 protein_coding Danio_rerio 0 2060
ENSDART00000092373 myh9b-201 protein_coding Danio_rerio 0 1666
ENSDART00000149823 myh9a-001 protein_coding Danio_rerio 0 1463
ENSDART00000011353 myh9a-201 protein_coding Danio_rerio 0 1312
ENSDART00000004854 myh11b-201 protein_coding Danio_rerio 0 1144
ENSDART00000105232 myh9a-202 protein_coding Danio_rerio 0 1122
ENSMUST00000018887 Myh10-002 protein_coding Mus_musculus 0 1046
ENSMUST00000107900 Myh14-201 protein_coding Mus_musculus 0 968
ENSMUST00000048102 Myh14-001 protein_coding Mus_musculus 0 968
ENSMUST00000107899 Myh14-002 protein_coding Mus_musculus 0 968
ENSMUST00000155765 Myh10-010 retained_intron Mus_musculus 0 854
ENSDART00000148622 myh11b-001 protein_coding Danio_rerio 0 843
ENSMUST00000182648 Myh14-007 protein_coding Mus_musculus 0 571
ENSMUST00000124844 Myh9-005 processed_transcript Mus_musculus 0 544
ENSMUST00000129453 Myh9-002 retained_intron Mus_musculus 0 544
ENSMUST00000126796 Myh9-004 retained_intron Mus_musculus 0 544
ENSMUST00000134878 Myh9-003 retained_intron Mus_musculus 0 433
ENSMUST00000123101 Myh9-006 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000125870 Myh14-003 processed_transcript Mus_musculus 0.00000000000004 86

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