C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPEG complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396698 SPEG-014 ENSG00000072195 9606 + 2:219442045-219466860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainKidneyLungPlacentaENST00000396698
Transcript ID Adipose Adrenal Brain Kidney Lung Placenta
ENST00000396698 2.678±0.00 4.186±0.00 2.544±0.00 0.687±0.00 4.057±0.00 1.966±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113590 Speg-002 protein_coding Mus_musculus 0 3450
ENSMUST00000087122 Speg-001 protein_coding Mus_musculus 0 2846
ENSMUST00000137868 Speg-003 protein_coding Mus_musculus 0 2165
ENSMUST00000132222 Speg-004 processed_transcript Mus_musculus 0 1308
ENSMUST00000113587 Speg-014 protein_coding Mus_musculus 0 998
ENSMUST00000113588 Speg-013 protein_coding Mus_musculus 0 992
ENSMUST00000122266 Speg-009 protein_coding Mus_musculus 0 952
ENSMUST00000113589 Speg-008 protein_coding Mus_musculus 0 767
ENSMUST00000125118 Speg-007 retained_intron Mus_musculus 0 649
ENSMUST00000132228 Speg-011 nonsense_mediated_decay Mus_musculus 0 545
ENSMUST00000148515 Speg-006 protein_coding Mus_musculus 0 508
ENSMUST00000125306 Speg-012 nonsense_mediated_decay Mus_musculus 0 398
ENSMUST00000146705 Speg-005 processed_transcript Mus_musculus 0 379
ENSMUST00000187214 Speg-015 retained_intron Mus_musculus 1e-32 147

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