C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059647 Rbm12-001 ENSMUSG00000089824 10090 - 2:156091958-156111956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENSMUST00000059647
Transcript ID Brain Placenta
ENSMUST00000059647 8.401±0.00 2.181±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965
CIL_0006AA CIL_0006AA_0002 CGP 2:156091958-156144186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317677 CPNE1-005 protein_coding Homo_sapiens 0 226
ENST00000352393 CPNE1-004 protein_coding Homo_sapiens 0 305
ENST00000359646 RBM12-003 protein_coding Homo_sapiens 0 2880
ENST00000374104 RBM12-002 protein_coding Homo_sapiens 0 2935
ENST00000374114 RBM12-001 protein_coding Homo_sapiens 0 3199
ENST00000397442 CPNE1-032 protein_coding Homo_sapiens 2e-21 108
ENST00000397443 CPNE1-201 protein_coding Homo_sapiens 0 215
ENST00000397445 CPNE1-202 protein_coding Homo_sapiens 0 329
ENST00000401607 CPNE1-028 nonsense_mediated_decay Homo_sapiens 2e-21 108
ENST00000412056 CPNE1-014 protein_coding Homo_sapiens 2e-24 117
ENST00000414664 CPNE1-007 protein_coding Homo_sapiens 0 207
ENST00000414711 CPNE1-011 protein_coding Homo_sapiens 0 364
ENST00000416778 CPNE1-017 protein_coding Homo_sapiens 1e-35 154
ENST00000420363 CPNE1-008 protein_coding Homo_sapiens 0 189
ENST00000424458 RBM12-004 protein_coding Homo_sapiens 0 1375
ENST00000430570 CPNE1-013 protein_coding Homo_sapiens 0 215
ENST00000431148 RBM12-005 protein_coding Homo_sapiens 0 761
ENST00000434795 CPNE1-016 protein_coding Homo_sapiens 0 303
ENST00000435161 RBM12-006 protein_coding Homo_sapiens 0 782
ENST00000437100 CPNE1-010 protein_coding Homo_sapiens 0 553
ENST00000437340 CPNE1-033 protein_coding Homo_sapiens 7e-37 159
ENST00000439669 CPNE1-025 nonsense_mediated_decay Homo_sapiens 4.00001e-41 172
ENST00000440240 CPNE1-012 protein_coding Homo_sapiens 0 250
ENST00000441563 RP1-309K20.6-003 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000454607 RP1-309K20.6-002 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000458038 CPNE1-020 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000475146 CPNE1-024 processed_transcript Homo_sapiens 0 189
ENST00000483359 CPNE1-027 retained_intron Homo_sapiens 4e-34 150
ENST00000541176 RP1-309K20.6-001 nonsense_mediated_decay Homo_sapiens 0 364

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