C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 28036
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127956 Gm28036-002 ENSMUSG00000098950 10090 - 2:156071845-156098085 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000127956
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000127956 2.901±0.00 9.269±1.38 8.996±3.17 3.178±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317677 CPNE1-005 protein_coding Homo_sapiens 0 1777
ENST00000352393 CPNE1-004 protein_coding Homo_sapiens 0 1779
ENST00000359646 RBM12-003 protein_coding Homo_sapiens 0 2338
ENST00000374104 RBM12-002 protein_coding Homo_sapiens 0 2338
ENST00000374114 RBM12-001 protein_coding Homo_sapiens 0 2338
ENST00000397442 CPNE1-032 protein_coding Homo_sapiens 0 1546
ENST00000397443 CPNE1-201 protein_coding Homo_sapiens 0 1779
ENST00000397445 CPNE1-202 protein_coding Homo_sapiens 0 1783
ENST00000401607 CPNE1-028 nonsense_mediated_decay Homo_sapiens 0 1685
ENST00000412056 CPNE1-014 protein_coding Homo_sapiens 0 468
ENST00000414664 CPNE1-007 protein_coding Homo_sapiens 0 1081
ENST00000414711 CPNE1-011 protein_coding Homo_sapiens 0 494
ENST00000416778 CPNE1-017 protein_coding Homo_sapiens 0 468
ENST00000420363 CPNE1-008 protein_coding Homo_sapiens 0 717
ENST00000424458 RBM12-004 protein_coding Homo_sapiens 0 773
ENST00000430570 CPNE1-013 protein_coding Homo_sapiens 0 468
ENST00000431148 RBM12-005 protein_coding Homo_sapiens 0 217
ENST00000434795 CPNE1-016 protein_coding Homo_sapiens 0 699
ENST00000435161 RBM12-006 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000435747 CPNE1-021 protein_coding Homo_sapiens 0 252
ENST00000437100 CPNE1-010 protein_coding Homo_sapiens 0 553
ENST00000437340 CPNE1-033 protein_coding Homo_sapiens 0 1744
ENST00000439669 CPNE1-025 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000439806 CPNE1-009 protein_coding Homo_sapiens 0 789
ENST00000440240 CPNE1-012 protein_coding Homo_sapiens 0 614
ENST00000441563 RP1-309K20.6-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000454607 RP1-309K20.6-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000458038 CPNE1-020 protein_coding Homo_sapiens 0 472
ENST00000483359 CPNE1-027 retained_intron Homo_sapiens 0 468
ENST00000541176 RP1-309K20.6-001 nonsense_mediated_decay Homo_sapiens 0 438

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