C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401954 HNRNPA1P1-001 ENSG00000218347 9606 + 6:27523076-27524339 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401954
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401954 1.697±0.00 1.429±0.00 0.649±0.00 0.445±0.00 1.968±0.00 0.460±0.00 0.829±0.00 0.101±0.00 1.038±0.00 0.847±0.00 0.097±0.06 0.034±0.00 0.774±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0001 VISTA 6:27032592-27634418

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1016
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 983
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 948
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 765
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 754
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 259

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