C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129154 Hnrnpa1l2-ps-001 ENSMUSG00000086743 10090 + 13:74864305-74865356 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129154
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129154 0.070±0.00 0.281±0.13 0.054±0.01 0.078±0.00 0.151±0.00 0.062±0.02 0.116±0.03 0.157±0.08 0.153±0.08 0.054±0.02 0.221±0.14 0.212±0.03 0.098±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JE CIL_0000JE_0002 CGP 13:74694286-75132498

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283131 SMARCA5-001 protein_coding Homo_sapiens 0 355
ENST00000330752 HNRNPA1-023 protein_coding Homo_sapiens 0 850
ENST00000340913 HNRNPA1-002 protein_coding Homo_sapiens 0 981
ENST00000342073 HNRNPA1P61-001 processed_pseudogene Homo_sapiens 0 966
ENST00000357495 HNRNPA1L2-001 protein_coding Homo_sapiens 0 1232
ENST00000391992 HNRNPA1P34-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000394002 HNRNPA1P6-001 unprocessed_pseudogene Homo_sapiens 0 1020
ENST00000396326 HNRNPA1P32-001 processed_pseudogene Homo_sapiens 0 819
ENST00000401954 HNRNPA1P1-001 processed_pseudogene Homo_sapiens 0 948
ENST00000403629 HNRNPA1P58-001 processed_pseudogene Homo_sapiens 0 673
ENST00000404243 HNRNPA1P37-001 processed_pseudogene Homo_sapiens 0 1048
ENST00000411674 HNRNPA1P64-001 processed_pseudogene Homo_sapiens 0 691
ENST00000411735 HNRNPA1P46-001 processed_pseudogene Homo_sapiens 0 935
ENST00000411857 HNRNPA1P54-001 processed_pseudogene Homo_sapiens 0 726
ENST00000412087 HNRNPA1P27-001 processed_pseudogene Homo_sapiens 0 1118
ENST00000414732 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1103
ENST00000416539 HNRNPA1P66-001 processed_pseudogene Homo_sapiens 0 771
ENST00000421336 HNRNPA1P49-001 processed_pseudogene Homo_sapiens 0 695
ENST00000421426 HNRNPA1P33-001 processed_pseudogene Homo_sapiens 0 713
ENST00000422644 HNRNPA1P25-001 processed_pseudogene Homo_sapiens 0 824
ENST00000424115 HNRNPA1P21-001 processed_pseudogene Homo_sapiens 0 1096
ENST00000424481 HNRNPA1P28-001 processed_pseudogene Homo_sapiens 0 1098
ENST00000425806 HNRNPA1P68-001 processed_pseudogene Homo_sapiens 0 728
ENST00000426371 HNRNPA1P40-001 processed_pseudogene Homo_sapiens 0 1005
ENST00000427917 HNRNPA1P63-001 processed_pseudogene Homo_sapiens 0 1072
ENST00000429216 HNRNPA1P35-001 processed_pseudogene Homo_sapiens 0 1210
ENST00000430583 HNRNPA1P59-001 processed_pseudogene Homo_sapiens 0 363
ENST00000431344 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1109
ENST00000432375 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000436090 HNRNPA1P8-001 processed_pseudogene Homo_sapiens 0 1206
ENST00000436809 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1114
ENST00000437295 HNRNPA1P22-001 processed_pseudogene Homo_sapiens 0 1040
ENST00000440352 HNRNPA1P14-001 processed_pseudogene Homo_sapiens 0 355
ENST00000440547 HNRNPA1P39-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000440699 HNRNPA1P30-001 transcribed_processed_pseudogene Homo_sapiens 0 931
ENST00000441603 HNRNPA1P53-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000444886 HNRNPA1P15-001 processed_pseudogene Homo_sapiens 0 1020
ENST00000444945 HNRNPA1P10-001 processed_pseudogene Homo_sapiens 0 1266
ENST00000446472 HNRNPA1P73-001 processed_pseudogene Homo_sapiens 0 798
ENST00000446988 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000446999 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000450624 HNRNPA1P9-001 processed_pseudogene Homo_sapiens 0 946
ENST00000452488 HNRNPA1P57-001 transcribed_processed_pseudogene Homo_sapiens 0 1074
ENST00000452680 HNRNPA1P43-001 processed_pseudogene Homo_sapiens 0 706
ENST00000452727 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000457180 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000457695 HNRNPA1P26-001 processed_pseudogene Homo_sapiens 0 752
ENST00000458678 HNRNPA1P42-001 processed_pseudogene Homo_sapiens 0 1085
ENST00000474219 HNRNPA3P8-001 processed_pseudogene Homo_sapiens 0 704
ENST00000476029 HNRNPA1P24-001 processed_pseudogene Homo_sapiens 0 562
ENST00000484852 HNRNPA1P20-001 processed_pseudogene Homo_sapiens 0 1022
ENST00000491091 HNRNPA1P23-001 processed_pseudogene Homo_sapiens 0 651
ENST00000503999 HNRNPA1P44-001 processed_pseudogene Homo_sapiens 0 828
ENST00000505767 HNRNPA1P56-001 processed_pseudogene Homo_sapiens 0 1053
ENST00000505935 HNRNPA1P55-001 processed_pseudogene Homo_sapiens 0 1037
ENST00000508873 HNRNPA1P65-001 processed_pseudogene Homo_sapiens 0 876
ENST00000509706 HNRNPA1P4-001 processed_pseudogene Homo_sapiens 0 1000
ENST00000510646 HNRNPA1P13-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000512366 RP11-481K16.2-002 processed_transcript Homo_sapiens 0 351
ENST00000515019 RP11-481K16.2-001 transcribed_processed_pseudogene Homo_sapiens 0 350
ENST00000515379 HNRNPA1P12-001 processed_pseudogene Homo_sapiens 0 1182
ENST00000521273 HNRNPA1P7-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000521313 HNRNPA1P36-001 processed_pseudogene Homo_sapiens 0 1064
ENST00000521638 HNRNPA3P7-001 processed_pseudogene Homo_sapiens 0 931
ENST00000529475 HNRNPA1P76-001 processed_pseudogene Homo_sapiens 0 274
ENST00000529511 HNRNPA1P72-001 processed_pseudogene Homo_sapiens 0 688
ENST00000546500 HNRNPA1-001 protein_coding Homo_sapiens 0 1282
ENST00000546565 HNRNPA1P50-001 processed_pseudogene Homo_sapiens 0 952
ENST00000547276 HNRNPA1-012 protein_coding Homo_sapiens 0 776
ENST00000547566 HNRNPA1-006 nonsense_mediated_decay Homo_sapiens 0 1282
ENST00000547708 HNRNPA1-015 protein_coding Homo_sapiens 0 255
ENST00000547870 HNRNPA1-016 retained_intron Homo_sapiens 0 568
ENST00000548688 HNRNPA1-013 protein_coding Homo_sapiens 0 778
ENST00000550482 HNRNPA1-018 protein_coding Homo_sapiens 0 821
ENST00000551679 HNRNPA1-020 retained_intron Homo_sapiens 0 305
ENST00000551702 HNRNPA1-019 protein_coding Homo_sapiens 0 387
ENST00000558213 HNRNPA1P5-001 processed_pseudogene Homo_sapiens 0 1074
ENST00000559135 HNRNPA1P71-001 processed_pseudogene Homo_sapiens 0 845
ENST00000560782 HNRNPA1P74-001 processed_pseudogene Homo_sapiens 0 704
ENST00000560893 HNRNPA1P45-001 processed_pseudogene Homo_sapiens 0 377
ENST00000562726 HNRNPA1P48-002 processed_transcript Homo_sapiens 0 1271
ENST00000565308 HNRNPA1P48-001 transcribed_processed_pseudogene Homo_sapiens 0 1267
ENST00000570662 SRR-009 protein_coding Homo_sapiens 0 291
ENST00000575692 HNRNPA1P16-001 processed_pseudogene Homo_sapiens 0 1066
ENST00000580106 HNRNPA1P11-001 processed_pseudogene Homo_sapiens 0 970
ENST00000599047 HNRNPA1P52-001 processed_pseudogene Homo_sapiens 0 1035
ENST00000604027 HNRNPA1P67-001 processed_pseudogene Homo_sapiens 0 904

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