C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404109 RP11-428J1.2-001 ENSG00000217030 9606 + 6:4979072-4979494 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungMuscleOvaryTestisENST00000404109
Transcript ID Adrenal Brain Breast Colon Lung Muscle Ovary Testis
ENST00000404109 0.033±0.00 0.035±0.00 0.101±0.00 0.031±0.00 0.032±0.00 0.324±0.00 0.057±0.00 0.043±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0002 CGP 6:4706159-5004063

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 278
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 270
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 267
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 267
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 265
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 265
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 259
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 209
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 207

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