C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 11361
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077163 Gm11361-001 ENSMUSG00000061330 10090 + 13:28257636-28258094 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077163 2.060±0.55 0.198±0.00 2.090±1.87 0.347±0.34 0.608±0.22 0.348±0.11 0.194±0.07 0.352±0.08 1.374±1.50 0.429±0.23 0.107±0.03 2.015±1.64 0.366±0.49 0.245±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UL CIL_0008UL_0002 VISTA 13:28115132-28717928

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000142769 rps18-002 protein_coding Danio_rerio 0 331
ENSDART00000143134 rps18-003 protein_coding Danio_rerio 0 331
ENSDART00000017975 rps18-001 protein_coding Danio_rerio 0 331
ENSDART00000134350 rps18-004 retained_intron Danio_rerio 0 237
ENSDART00000131839 rps18-005 protein_coding Danio_rerio 0 233
ENST00000211372 RPS18-001 protein_coding Homo_sapiens 0 634
ENST00000404109 RP11-428J1.2-001 processed_pseudogene Homo_sapiens 0 259
ENST00000412454 RPS18P12-001 processed_pseudogene Homo_sapiens 0 579
ENST00000434122 RPS18-001 protein_coding Homo_sapiens 0 634
ENST00000439602 RPS18-001 protein_coding Homo_sapiens 0 634
ENST00000440980 RPS18-001 protein_coding Homo_sapiens 4.00001e-40 167
ENST00000454021 RPS18-001 protein_coding Homo_sapiens 0 634
ENST00000457341 RPS18-001 protein_coding Homo_sapiens 0 634
ENST00000459882 RPS18-002 processed_transcript Homo_sapiens 0 630
ENST00000461584 RPS18-005 retained_intron Homo_sapiens 0 630
ENST00000463232 RPS18-005 retained_intron Homo_sapiens 0 630
ENST00000464447 RPS18-007 retained_intron Homo_sapiens 0 536
ENST00000464602 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000470276 RPS18-003 processed_transcript Homo_sapiens 0 473
ENST00000470852 RPS18-005 retained_intron Homo_sapiens 0 630
ENST00000472218 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000472979 RPS18-007 retained_intron Homo_sapiens 0 536
ENST00000473242 RPS18-006 retained_intron Homo_sapiens 0 431
ENST00000473705 RPS18-005 retained_intron Homo_sapiens 2e-38 163
ENST00000474626 RPS18-006 retained_intron Homo_sapiens 0 431
ENST00000474973 RPS18-002 protein_coding Homo_sapiens 0 630
ENST00000475634 RPS18-005 retained_intron Homo_sapiens 0 630
ENST00000476222 RPS18-003 processed_transcript Homo_sapiens 0 473
ENST00000476288 RPS18-003 protein_coding Homo_sapiens 0 473
ENST00000476337 RPS18-002 processed_transcript Homo_sapiens 0 630
ENST00000476880 RPS18P6-001 processed_pseudogene Homo_sapiens 0 333
ENST00000477055 RPS18-002 protein_coding Homo_sapiens 0 630
ENST00000477273 RPS18-006 retained_intron Homo_sapiens 0 431
ENST00000477787 RPS18-007 retained_intron Homo_sapiens 0 536
ENST00000481330 RPS18-006 retained_intron Homo_sapiens 0 431
ENST00000482391 RPS18-007 retained_intron Homo_sapiens 0 536
ENST00000482698 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000482817 RPS18P9-001 processed_pseudogene Homo_sapiens 0 520
ENST00000484321 RPS18-003 protein_coding Homo_sapiens 0 473
ENST00000485674 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000486781 RPS18-002 protein_coding Homo_sapiens 0 630
ENST00000489474 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000490191 RPS18-005 retained_intron Homo_sapiens 0 630
ENST00000490380 RPS18-006 retained_intron Homo_sapiens 0 431
ENST00000494232 RPS18-003 protein_coding Homo_sapiens 0 473
ENST00000495909 CTD-2061E19.1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000496294 RP11-234A1.1-001 processed_pseudogene Homo_sapiens 0 601
ENST00000496813 RPS18-007 retained_intron Homo_sapiens 0 536
ENST00000497078 RPS18-002 processed_transcript Homo_sapiens 5e-39 163

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