C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120838 Rps18-ps1-001 ENSMUSG00000083914 10090 - 4:71370738-71371196 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120838
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120838 0.736±0.19 0.288±0.02 0.083±0.03 0.202±0.07 0.096±0.00 0.133±0.06 0.324±0.11 0.220±0.00 0.154±0.01 0.538±0.29 0.562±0.41 0.172±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KE CIL_0007KE_0004 UCNEbase 4:70810873-73489292
CIL_0008XV CIL_0008XV_0002 VISTA 4:70830904-71432135
CIL_0008JB CIL_0008JB_0002 VISTA 4:71166275-71767327
CIL_0008JX CIL_0008JX_0002 VISTA 4:71183744-71784988

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017975 rps18-001 protein_coding Danio_rerio 0 320
ENSDART00000143134 rps18-003 protein_coding Danio_rerio 0 316
ENSDART00000142769 rps18-002 protein_coding Danio_rerio 0 315
ENSDART00000131839 rps18-005 protein_coding Danio_rerio 0 217
ENSDART00000134350 rps18-004 retained_intron Danio_rerio 0 215
ENST00000211372 RPS18-001 protein_coding Homo_sapiens 0 601
ENST00000404109 RP11-428J1.2-001 processed_pseudogene Homo_sapiens 0 243
ENST00000412454 RPS18P12-001 processed_pseudogene Homo_sapiens 0 556
ENST00000434122 RPS18-001 protein_coding Homo_sapiens 0 601
ENST00000439602 RPS18-001 protein_coding Homo_sapiens 0 601
ENST00000440980 RPS18-001 protein_coding Homo_sapiens 2e-38 161
ENST00000454021 RPS18-001 protein_coding Homo_sapiens 0 601
ENST00000457341 RPS18-001 protein_coding Homo_sapiens 0 601
ENST00000459882 RPS18-002 processed_transcript Homo_sapiens 0 597
ENST00000461584 RPS18-005 retained_intron Homo_sapiens 0 597
ENST00000463232 RPS18-005 retained_intron Homo_sapiens 0 597
ENST00000464447 RPS18-007 retained_intron Homo_sapiens 0 508
ENST00000464602 RPS18-004 retained_intron Homo_sapiens 0 261
ENST00000470276 RPS18-003 processed_transcript Homo_sapiens 0 446
ENST00000470852 RPS18-005 retained_intron Homo_sapiens 0 597
ENST00000472218 RPS18-004 retained_intron Homo_sapiens 0 261
ENST00000472979 RPS18-007 retained_intron Homo_sapiens 0 508
ENST00000473242 RPS18-006 retained_intron Homo_sapiens 0 414
ENST00000473705 RPS18-005 retained_intron Homo_sapiens 8e-37 158
ENST00000474626 RPS18-006 retained_intron Homo_sapiens 0 414
ENST00000474973 RPS18-002 protein_coding Homo_sapiens 0 597
ENST00000475634 RPS18-005 retained_intron Homo_sapiens 0 597
ENST00000476222 RPS18-003 processed_transcript Homo_sapiens 0 446
ENST00000476288 RPS18-003 protein_coding Homo_sapiens 0 446
ENST00000476337 RPS18-002 processed_transcript Homo_sapiens 0 597
ENST00000476880 RPS18P6-001 processed_pseudogene Homo_sapiens 0 339
ENST00000477055 RPS18-002 protein_coding Homo_sapiens 0 597
ENST00000477273 RPS18-006 retained_intron Homo_sapiens 0 414
ENST00000477787 RPS18-007 retained_intron Homo_sapiens 0 508
ENST00000481330 RPS18-006 retained_intron Homo_sapiens 0 414
ENST00000482391 RPS18-007 retained_intron Homo_sapiens 0 508
ENST00000482698 RPS18-004 retained_intron Homo_sapiens 0 261
ENST00000482817 RPS18P9-001 processed_pseudogene Homo_sapiens 0 492
ENST00000484321 RPS18-003 protein_coding Homo_sapiens 0 446
ENST00000485674 RPS18-004 retained_intron Homo_sapiens 0 261
ENST00000486781 RPS18-002 protein_coding Homo_sapiens 0 597
ENST00000489474 RPS18-004 retained_intron Homo_sapiens 0 261
ENST00000490191 RPS18-005 retained_intron Homo_sapiens 0 597
ENST00000490380 RPS18-006 retained_intron Homo_sapiens 0 414
ENST00000494232 RPS18-003 protein_coding Homo_sapiens 0 446
ENST00000495909 CTD-2061E19.1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000496294 RP11-234A1.1-001 processed_pseudogene Homo_sapiens 0 568
ENST00000496813 RPS18-007 retained_intron Homo_sapiens 0 508
ENST00000497078 RPS18-002 processed_transcript Homo_sapiens 2e-37 158

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