C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080443 Rps18-ps3-201 ENSMUSG00000057657 10090 - 8:107262817-107263248 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080443
Transcript ID Adipose Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080443 0.274±0.05 0.172±0.04 0.563±0.51 0.230±0.00 0.435±0.42 0.237±0.00 0.162±0.02 0.581±0.10 0.537±0.66 0.452±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017975 rps18-001 protein_coding Danio_rerio 0 309
ENSDART00000143134 rps18-003 protein_coding Danio_rerio 0 305
ENSDART00000142769 rps18-002 protein_coding Danio_rerio 0 303
ENSDART00000131839 rps18-005 protein_coding Danio_rerio 0 239
ENSDART00000134350 rps18-004 retained_intron Danio_rerio 0 237
ENST00000211372 RPS18-001 protein_coding Homo_sapiens 0 604
ENST00000404109 RP11-428J1.2-001 processed_pseudogene Homo_sapiens 0 265
ENST00000412454 RPS18P12-001 processed_pseudogene Homo_sapiens 0 555
ENST00000434122 RPS18-001 protein_coding Homo_sapiens 0 604
ENST00000439602 RPS18-001 protein_coding Homo_sapiens 0 604
ENST00000440980 RPS18-001 protein_coding Homo_sapiens 9.00054e-42 172
ENST00000454021 RPS18-001 protein_coding Homo_sapiens 0 604
ENST00000457341 RPS18-001 protein_coding Homo_sapiens 0 604
ENST00000459882 RPS18-002 processed_transcript Homo_sapiens 0 601
ENST00000461584 RPS18-005 retained_intron Homo_sapiens 0 601
ENST00000463232 RPS18-005 retained_intron Homo_sapiens 0 601
ENST00000464447 RPS18-007 retained_intron Homo_sapiens 0 542
ENST00000464602 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000470276 RPS18-003 processed_transcript Homo_sapiens 0 438
ENST00000470852 RPS18-005 retained_intron Homo_sapiens 0 601
ENST00000472218 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000472979 RPS18-007 retained_intron Homo_sapiens 0 542
ENST00000473242 RPS18-006 retained_intron Homo_sapiens 0 436
ENST00000473705 RPS18-005 retained_intron Homo_sapiens 4.00001e-40 169
ENST00000474626 RPS18-006 retained_intron Homo_sapiens 0 436
ENST00000474973 RPS18-002 protein_coding Homo_sapiens 0 601
ENST00000475634 RPS18-005 retained_intron Homo_sapiens 0 601
ENST00000476222 RPS18-003 processed_transcript Homo_sapiens 0 438
ENST00000476288 RPS18-003 protein_coding Homo_sapiens 0 438
ENST00000476337 RPS18-002 processed_transcript Homo_sapiens 0 601
ENST00000476880 RPS18P6-001 processed_pseudogene Homo_sapiens 0 331
ENST00000477055 RPS18-002 protein_coding Homo_sapiens 0 601
ENST00000477273 RPS18-006 retained_intron Homo_sapiens 0 436
ENST00000477787 RPS18-007 retained_intron Homo_sapiens 0 542
ENST00000481330 RPS18-006 retained_intron Homo_sapiens 0 436
ENST00000482391 RPS18-007 retained_intron Homo_sapiens 0 542
ENST00000482698 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000482817 RPS18P9-001 processed_pseudogene Homo_sapiens 0 505
ENST00000484321 RPS18-003 protein_coding Homo_sapiens 0 438
ENST00000485674 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000486781 RPS18-002 protein_coding Homo_sapiens 0 601
ENST00000489474 RPS18-004 retained_intron Homo_sapiens 0 272
ENST00000490191 RPS18-005 retained_intron Homo_sapiens 0 601
ENST00000490380 RPS18-006 retained_intron Homo_sapiens 0 436
ENST00000494232 RPS18-003 protein_coding Homo_sapiens 0 438
ENST00000495909 CTD-2061E19.1-001 processed_pseudogene Homo_sapiens 0 438
ENST00000496294 RP11-234A1.1-001 processed_pseudogene Homo_sapiens 0 571
ENST00000496813 RPS18-007 retained_intron Homo_sapiens 0 542
ENST00000497078 RPS18-002 processed_transcript Homo_sapiens 9.99995e-41 169

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