C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404151 RPL7P25-001 ENSG00000216636 9606 + 6:34616538-34617258 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverLungMuscleOvaryTestisENST00000404151
Transcript ID Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Testis
ENST00000404151 0.077±0.00 0.601±0.00 0.054±0.00 0.530±0.51 0.068±0.00 0.130±0.00 0.072±0.02 0.027±0.00 0.025±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LT CIL_0004LT_0002 CGP 6:34537802-34696859
CIL_000258 CIL_000258_0001 CGP 6:34587288-34773794

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 595
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 584
ENSMUST00000149566 Rpl7-003 protein_coding Mus_musculus 0 544
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 442
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 442
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 435
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000136180 1700073E17Rik-004 processed_transcript Mus_musculus 0 357
ENSMUST00000125005 Rpl7-004 retained_intron Mus_musculus 0 302
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 226
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 226

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