C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latent transforming growth factor beta binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404525 LTBP1-001 ENSG00000049323 9606 + 2:33134639-33399509 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryPlacentaENST00000404525
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta
ENST00000404525 1.837±0.00 0.544±0.00 6.358±0.00 0.592±0.00 3.044±0.78 5.424±0.00 1.363±0.00 6.407±5.97 23.280±6.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TE CIL_0003TE_0002 CGP 2:32628032-33399509
CIL_0000MZ CIL_0000MZ_0001 CGP 2:32946972-33564750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005024 NAS transforming growth factor beta-activated receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0007178 NAS transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0035583 TAS sequestering of TGFbeta in extracellular matrix
GO:0050431 IPI transforming growth factor beta binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112514 Ltbp1-007 protein_coding Mus_musculus 0 5051
ENSMUST00000112516 Ltbp1-002 protein_coding Mus_musculus 0 3432
ENSMUST00000001927 Ltbp1-001 protein_coding Mus_musculus 0 3432
ENSMUST00000135447 Ltbp1-003 protein_coding Mus_musculus 0 1663
ENSMUST00000135750 Ltbp1-005 retained_intron Mus_musculus 0 893
ENSMUST00000127458 Ltbp1-004 retained_intron Mus_musculus 0 381
ENSDART00000079460 ltbp1-201 protein_coding Danio_rerio 9e-25 121
ENSDART00000155145 ltbp1-001 protein_coding Danio_rerio 4e-18 99

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