C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latent transforming growth factor beta binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404816 LTBP1-014 ENSG00000049323 9606 + 2:32946972-33399359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404816
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404816 5.892±0.00 1.545±0.00 1.562±0.00 2.124±0.00 2.380±1.45 4.352±0.87 2.166±1.44 2.366±1.15 2.105±0.55 1.176±0.00 2.270±0.00 16.099±8.94 4.463±2.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TE CIL_0003TE_0002 CGP 2:32628032-33399509
CIL_0000MZ CIL_0000MZ_0001 CGP 2:32946972-33564750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005024 NAS transforming growth factor beta-activated receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0007178 NAS transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0035583 TAS sequestering of TGFbeta in extracellular matrix
GO:0050431 IPI transforming growth factor beta binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001927 Ltbp1-001 protein_coding Mus_musculus 0 6061
ENSMUST00000112516 Ltbp1-002 protein_coding Mus_musculus 0 5216
ENSMUST00000135447 Ltbp1-003 protein_coding Mus_musculus 0 3446
ENSMUST00000112514 Ltbp1-007 protein_coding Mus_musculus 0 3432
ENSMUST00000135750 Ltbp1-005 retained_intron Mus_musculus 0 893
ENSMUST00000127458 Ltbp1-004 retained_intron Mus_musculus 0 381
ENSDART00000079460 ltbp1-201 protein_coding Danio_rerio 5e-28 132
ENSDART00000155145 ltbp1-001 protein_coding Danio_rerio 5e-28 132

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