C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orthodenticle homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405984 OTX1-005 ENSG00000115507 9606 + 2:63050831-63056583 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastOvaryPlacentaENST00000405984
Transcript ID Adipose Brain Breast Ovary Placenta
ENST00000405984 0.059±0.00 0.103±0.00 0.169±0.00 0.273±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000976 CIL_000976_0001 VISTA 2:62666720-63267794
CIL_0000RR CIL_0000RR_0002 CGP 2:62673851-63057836
CIL_00084N CIL_00084N_0001 VISTA 2:62678793-63279521
CIL_00090Q CIL_00090Q_0001 VISTA 2:62740879-63342178
CIL_00095K CIL_00095K_0001 VISTA 2:62748560-63349968
CIL_0007MW CIL_0007MW_0001 UCNEbase 2:62787578-63424747
CIL_000100 CIL_000100_0002 CGP 2:63050057-63827843

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172395 Otx1-002 retained_intron Mus_musculus 0 1386
ENSMUST00000006071 Otx1-001 protein_coding Mus_musculus 0 1365
ENSMUST00000147486 Otx1-003 protein_coding Mus_musculus 0 311

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