C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079085 Rpl34-002 ENSMUSG00000062006 10090 - 3:130726839-130730398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079085 888.705±319.13 144.096±15.76 1021.920±21.04 364.948±313.99 634.346±85.39 697.426±38.64 301.380±57.17 612.515±32.65 696.863±515.91 553.883±33.57 231.381±25.16 948.174±196.81 636.341±409.73 411.882±181.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PU CIL_0008PU_0002 VISTA 3:130139552-130741737
CIL_000872 CIL_000872_0002 VISTA 3:130437080-131038563
CIL_0008T5 CIL_0008T5_0002 VISTA 3:130661754-131264427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394665 RPL34-002 protein_coding Homo_sapiens 0 510
ENST00000394667 RPL34-001 protein_coding Homo_sapiens 0 536
ENST00000394668 RPL34-003 protein_coding Homo_sapiens 0 510
ENST00000407959 RP1-182O16.1-001 processed_pseudogene Homo_sapiens 0 387
ENST00000434718 RP11-569G9.7-001 processed_pseudogene Homo_sapiens 0 327
ENST00000445636 RPL34P26-001 processed_pseudogene Homo_sapiens 0 372
ENST00000456162 RP11-58A11.2-001 processed_pseudogene Homo_sapiens 0 272
ENST00000473394 RP11-268I9.1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000486062 RPL34P33-001 processed_pseudogene Homo_sapiens 0 355
ENST00000502534 RPL34-006 protein_coding Homo_sapiens 0 536
ENST00000506397 RPL34-005 protein_coding Homo_sapiens 0 508

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