C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm specific antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409136 SSFA2-009 ENSG00000138434 9606 + 2:181910505-181930738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryPlacentaTestisENST00000409136
Transcript ID Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000409136 4.750±0.00 5.198±0.00 5.293±0.00 6.336±0.00 12.588±0.00 12.729±0.00 3.820±0.95 9.683±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Y CIL_00080Y_0001 VISTA 2:181386314-181987082
CIL_0004BY CIL_0004BY_0002 CGP 2:181673088-181930738
CIL_0004BV CIL_0004BV_0002 CGP 2:181891833-182131398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133266 Ssfa2-002 processed_transcript Mus_musculus 0 2278
ENSMUST00000111785 Ssfa2-001 protein_coding Mus_musculus 0 2278
ENSMUST00000111784 Ssfa2-004 protein_coding Mus_musculus 0 955

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