C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 4, group A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409572 NR4A2-010 ENSG00000153234 9606 - 2:156325098-156342348 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungMusclePlacentaTestisENST00000409572
Transcript ID Bladder Brain Breast Colon Heart Lung Muscle Placenta Testis
ENST00000409572 1.737±0.00 1.089±0.00 0.616±0.00 0.347±0.00 0.108±0.00 3.050±2.35 1.320±0.85 0.096±0.00 1.756±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000758 CIL_000758_0001 CGP 2:154698299-156342348
CIL_0007NB CIL_0007NB_0001 UCNEbase 2:155519661-157149592
CIL_0008JL CIL_0008JL_0001 VISTA 2:155834848-156435620
CIL_000759 CIL_000759_0001 CGP 2:156324432-156613735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 NAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0031668 IDA cellular response to extracellular stimulus
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0071542 ISS dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112629 Nr4a2-001 protein_coding Mus_musculus 0 3555
ENSMUST00000028166 Nr4a2-003 protein_coding Mus_musculus 0 3535
ENSMUST00000112627 Nr4a2-006 protein_coding Mus_musculus 0 3072
ENSMUST00000183542 Nr4a2-002 nonsense_mediated_decay Mus_musculus 0 1677
ENSMUST00000140165 Nr4a2-005 processed_transcript Mus_musculus 0 880

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