C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000758_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162989-ENSG00000153234 CGP 9606 2:154698299-156342348
GeneTranscriptPositionBiotype
ENSG00000153234 (NR4A2)
nuclear receptor subfamily 4, group A, member 2 		ENST00000339562 (NR4A2-001) 156324432-156332716 protein_coding
ENST00000406048 (NR4A2-007) 156327904-156330121 protein_coding
ENST00000409108 (NR4A2-009) 156325744-156330707 protein_coding
ENST00000409572 (NR4A2-010) 156325098-156342348 protein_coding
ENST00000417764 (NR4A2-011) 156325100-156330788 nonsense_mediated_decay
ENST00000417972 (NR4A2-006) 156325100-156331965 nonsense_mediated_decay
ENST00000421709 (NR4A2-004) 156329678-156332720 protein_coding
ENST00000424077 (NR4A2-005) 156329413-156332713 protein_coding
ENST00000426264 (NR4A2-003) 156325082-156332714 protein_coding
ENST00000429376 (NR4A2-008) 156325744-156330721 protein_coding
ENSG00000162989 (KCNJ3)
potassium inwardly-rectifying channel, subfamily J, member 3 		ENST00000295101 (KCNJ3-001) 154698299-154858351 protein_coding
ENST00000493505 (KCNJ3-002) 154709332-154855028 processed_transcript
ENST00000544049 (KCNJ3-201) 154698581-154858352 protein_coding
ENSG00000226383 (AC093375.1)
 ENST00000428651 (AC093375.1-002) 156020535-156024576 lincRNA
ENST00000448255 (AC093375.1-001) 156011617-156024613 lincRNA
ENSG00000227682 (ATP5A1P2)
ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 2 		ENST00000412323 (ATP5A1P2-001) 155269633-155269887 transcribed_processed_pseudogene
ENST00000616464 (ATP5A1P2-002) 155269692-155270134 processed_transcript
ENSG00000228837 (CBX3P6)
chromobox homolog 3 pseudogene 6 		ENST00000430257 (CBX3P6-001) 154940541-154941067 processed_pseudogene
ENSG00000229701 (MTND2P20)
MT-ND2 pseudogene 20 		ENST00000440805 (MTND2P20-001) 155264163-155264823 processed_pseudogene
ENSG00000230991 (AC092625.1)
 ENST00000442706 (AC092625.1-001) 154965513-154968003 lincRNA
ENSG00000232982 (AC092662.2)
 ENST00000431457 (AC092662.2-001) 155263458-155263724 processed_pseudogene
ENSG00000233039 (MTND5P30)
MT-ND5 pseudogene 30 		ENST00000452896 (MTND5P30-001) 155311697-155313427 processed_pseudogene
ENSG00000235548 (AC073551.1)
 ENST00000450741 (AC073551.1-001) 156033247-156034080 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000758_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026824-ENSMUSG00000026826 CGP 10090 2:55435970-57124003
GeneTranscriptPositionBiotype
ENSMUSG00000026824 (Kcnj3)
potassium inwardly-rectifying channel, subfamily J, member 3 		ENSMUST00000067101 (Kcnj3-001) 55435970-55598145 protein_coding
ENSMUST00000112632 (Kcnj3-002) 55437165-55598140 protein_coding
ENSMUST00000112633 (Kcnj3-201) 55437156-55595525 protein_coding
ENSMUSG00000026826 (Nr4a2)
nuclear receptor subfamily 4, group A, member 2 		ENSMUST00000028166 (Nr4a2-003) 57106830-57115038 protein_coding
ENSMUST00000112627 (Nr4a2-006) 57107499-57113072 protein_coding
ENSMUST00000112629 (Nr4a2-001) 57106830-57124003 protein_coding
ENSMUST00000128776 (Nr4a2-004) 57112990-57114373 processed_transcript
ENSMUST00000140165 (Nr4a2-005) 57112003-57115038 processed_transcript
ENSMUST00000183542 (Nr4a2-002) 57106830-57124003 nonsense_mediated_decay
ENSMUSG00000082004 (Gm13519)
predicted gene 13519 		ENSMUST00000120500 (Gm13519-001) 56853733-56854004 processed_pseudogene
ENSMUSG00000082142 (Gm13518)
predicted gene 13518 		ENSMUST00000120018 (Gm13518-001) 56039853-56040085 processed_pseudogene
ENSMUSG00000082499 (Gm13615)
predicted gene 13615 		ENSMUST00000120242 (Gm13615-001) 55970695-55972994 processed_pseudogene
ENSMUSG00000082971 (Gm13517)
predicted gene 13517 		ENSMUST00000120782 (Gm13517-001) 55775548-55777042 processed_pseudogene
ENSMUSG00000097837 (Gm26794)
predicted gene, 26794 		ENSMUST00000180810 (Gm26794-201) 55433514-55437860 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000758_0001ENSG00000153234ENST00000339562ENST00000406048ENST00000409108ENST00000409572ENST00000417764ENST00000417972ENST00000421709ENST00000424077ENST00000426264ENST00000429376ENSG00000162989ENST00000295101ENST00000493505ENST00000544049ENSG00000226383ENST00000428651ENST00000448255ENSG00000227682ENST00000412323ENST00000616464ENSG00000228837ENST00000430257ENSG00000229701ENST00000440805ENSG00000230991ENST00000442706ENSG00000232982ENST00000431457ENSG00000233039ENST00000452896ENSG00000235548ENST00000450741CIL_000758_0002ENSMUSG00000026824ENSMUST00000067101ENSMUST00000112632ENSMUST00000112633ENSMUSG00000026826ENSMUST00000028166ENSMUST00000112627ENSMUST00000112629ENSMUST00000128776ENSMUST00000140165ENSMUST00000183542ENSMUSG00000082004ENSMUST00000120500ENSMUSG00000082142ENSMUST00000120018ENSMUSG00000082499ENSMUST00000120242ENSMUSG00000082971ENSMUST00000120782ENSMUSG00000097837ENSMUST00000180810
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000758_0001ENSG00000153234ENST00000339562ENST00000409108ENST00000409572ENST00000417764ENST00000421709ENST00000424077ENST00000426264ENST00000429376ENSG00000162989ENST00000295101ENST00000493505ENST00000544049ENSG00000226383ENST00000428651ENST00000448255ENSG00000227682ENST00000412323ENST00000616464ENSG00000228837ENST00000430257ENSG00000229701ENST00000440805ENSG00000230991ENST00000442706ENSG00000232982ENST00000431457ENSG00000233039ENST00000452896ENSG00000235548ENST00000450741CIL_000758_0002ENSMUSG00000026824ENSMUST00000067101ENSMUST00000112632ENSMUST00000112633ENSMUSG00000026826ENSMUST00000028166ENSMUST00000112627ENSMUST00000112629ENSMUST00000140165ENSMUST00000183542ENSMUSG00000082004ENSMUST00000120500ENSMUSG00000082142ENSMUST00000120018ENSMUSG00000082499ENSMUST00000120242ENSMUSG00000082971ENSMUST00000120782ENSMUSG00000097837ENSMUST00000180810
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153234 ENST00000339562 3.887±0.00 0.300±0.00 N/A 0.676±0.00 4.296±0.00 1.309±0.00 2.319±0.00 N/A N/A 10.466±0.00 N/A 38.420±26.52 0.446±0.00 0.833±0.00
ENST00000406048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409108 3.146±0.00 N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A 0.253±0.00 1.020±0.00
ENST00000409572 N/A N/A 1.737±0.00 1.089±0.00 0.616±0.00 0.347±0.00 0.108±0.00 N/A N/A 3.050±2.35 1.320±0.85 N/A 0.096±0.00 1.756±0.00
ENST00000417764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A
ENST00000417972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421709 N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENST00000424077 N/A N/A N/A N/A N/A N/A N/A N/A 1.754±0.00 N/A N/A N/A N/A N/A
ENST00000426264 3.096±0.00 N/A N/A N/A N/A N/A 0.835±0.00 0.022±0.00 1.672±0.00 N/A 0.615±0.00 N/A N/A 1.834±0.00
ENST00000429376 N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A 0.850±0.00 N/A 0.170±0.00 N/A
ENSG00000162989 ENST00000295101 0.046±0.00 0.082±0.00 1.530±0.00 7.083±0.30 N/A 0.109±0.02 0.934±0.00 1.636±1.01 0.102±0.00 N/A N/A 0.132±0.08 N/A 0.580±0.00
ENST00000493505 N/A N/A N/A N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A N/A 0.054±0.00 N/A
ENST00000544049 N/A 0.170±0.00 N/A N/A 0.089±0.00 N/A N/A 0.647±0.00 0.128±0.02 0.086±0.00 0.115±0.00 0.101±0.00 0.016±0.01 0.146±0.00
ENSG00000226383 ENST00000428651 N/A 0.019±0.00 0.106±0.00 0.085±0.07 N/A 0.056±0.00 0.052±0.03 0.167±0.00 N/A 0.030±0.00 N/A 0.149±0.12 0.022±0.01 0.087±0.01
ENST00000448255 0.066±0.00 0.085±0.00 N/A N/A 0.058±0.00 N/A 0.074±0.00 N/A N/A N/A N/A 0.096±0.00 0.072±0.03 0.188±0.00
ENSG00000227682 ENST00000412323 0.061±0.00 0.125±0.00 N/A 0.065±0.00 0.125±0.00 N/A 0.471±0.35 0.123±0.00 0.113±0.00 0.059±0.00 0.112±0.00 N/A N/A 0.057±0.00
ENST00000616464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.412±0.37
ENSG00000228837 ENST00000430257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.01
ENSG00000229701 ENST00000440805 N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A 0.247±0.00
ENSG00000230991 ENST00000442706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.554±0.00
ENSG00000232982 ENST00000431457 N/A N/A N/A N/A 0.061±0.00 N/A 0.125±0.00 N/A 0.054±0.00 N/A 0.171±0.00 N/A N/A N/A
ENSG00000233039 ENST00000452896 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A
ENSG00000235548 ENST00000450741 0.032±0.00 0.147±0.00 0.169±0.00 0.052±0.00 0.333±0.32 0.195±0.10 0.031±0.00 N/A 0.169±0.15 0.030±0.00 N/A 0.033±0.01 N/A 0.133±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026824 ENSMUST00000067101 0.176±0.05 0.038±0.00 N/A 1.450±0.84 0.013±0.00 0.032±0.00 7.391±0.23 0.016±0.01 N/A 0.375±0.19 0.079±0.01 0.703±0.22 0.004±0.00 N/A
ENSMUST00000112632 N/A N/A 0.004±0.00 1.448±0.72 N/A 0.094±0.00 N/A 0.037±0.00 0.016±0.01 N/A 0.056±0.02 1.163±0.44 N/A N/A
ENSMUST00000112633 0.099±0.00 0.147±0.03 0.008±0.00 1.610±0.17 0.049±0.01 0.173±0.08 23.210±0.88 0.122±0.04 0.013±0.01 1.315±0.19 0.066±0.00 2.535±0.63 N/A 0.039±0.02
ENSMUSG00000026826 ENSMUST00000028166 0.574±0.11 2.010±0.54 0.297±0.01 2.547±0.57 0.197±0.11 0.570±0.19 N/A 0.125±0.03 0.083±0.00 0.565±0.23 N/A 0.338±0.13 0.151±0.07 N/A
ENSMUST00000112627 0.169±0.00 1.006±0.27 N/A N/A 0.213±0.07 0.822±0.25 0.103±0.00 0.177±0.02 0.019±0.01 N/A 0.104±0.04 0.261±0.00 0.106±0.02 0.073±0.00
ENSMUST00000112629 0.479±0.24 1.122±0.34 0.313±0.06 1.102±0.00 0.317±0.18 0.484±0.15 0.238±0.10 0.106±0.03 0.155±0.06 0.352±0.10 0.144±0.05 0.615±0.16 0.121±0.04 0.245±0.03
ENSMUST00000128776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140165 0.420±0.00 N/A N/A N/A 0.568±0.00 N/A 0.190±0.12 0.224±0.13 0.099±0.03 N/A 0.167±0.02 N/A N/A 0.038±0.00
ENSMUST00000183542 N/A 1.000±0.35 N/A N/A 0.472±0.00 0.529±0.00 N/A N/A N/A 0.238±0.00 0.122±0.00 0.541±0.21 N/A N/A
ENSMUSG00000082004 ENSMUST00000120500 1.428±0.71 N/A 0.481±0.13 0.546±0.20 1.099±0.67 N/A N/A N/A 0.148±0.09 0.688±0.34 0.335±0.00 2.036±1.50 1.724±1.72 N/A
ENSMUSG00000082142 ENSMUST00000120018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.39
ENSMUSG00000082499 ENSMUST00000120242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.02
ENSMUSG00000082971 ENSMUST00000120782 N/A 0.084±0.00 N/A 0.015±0.00 0.063±0.00 N/A N/A N/A N/A 0.033±0.00 N/A 0.097±0.08 N/A N/A
ENSMUSG00000097837 ENSMUST00000180810 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A 0.018±0.00 0.244±0.00 N/A N/A

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