C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type IX, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112354 Scn9a-002 ENSMUSG00000075316 10090 - 2:66483117-66634653 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000112354
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112354 0.042±0.02 0.007±0.00 0.059±0.00 0.021±0.00 0.015±0.00 0.002±0.00 0.022±0.00 0.040±0.01 0.006±0.00 0.006±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962
CIL_0006CV CIL_0006CV_0002 CGP 2:66480080-66784914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IBA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0006954 IMP inflammatory response
GO:0009636 IDA response to toxic substance
GO:0009791 IMP post-embryonic development
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IBA sodium ion transmembrane transport
GO:0048266 IMP behavioral response to pain
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083256 scn12aa-201 protein_coding Danio_rerio 0 760
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 516
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 516
ENSDART00000090994 scn1lab-201 protein_coding Danio_rerio 0 466
ENSDART00000151247 scn1lab-001 protein_coding Danio_rerio 0 466
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 412
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 340
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 340
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 1864
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 2865
ENST00000302328 SCN11A-001 protein_coding Homo_sapiens 0 244
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 4599
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 1788
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 966
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 383
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 383
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 1864
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 1788
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 2865
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 2865
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 1788
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 1864
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 4484
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 6900
ENST00000409855 SCN7A-001 protein_coding Homo_sapiens 0 206
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 966
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 782
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 1788
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 966
ENST00000424326 SCN7A-003 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 782
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 776
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 966
ENST00000444237 SCN11A-002 protein_coding Homo_sapiens 0 243
ENST00000449082 SCN10A-001 protein_coding Homo_sapiens 0 569
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 966
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 966
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 966
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 1644
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 0 337
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 1663
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 531
ENST00000456224 SCN11A-003 protein_coding Homo_sapiens 0 244
ENST00000472119 SCN9A-006 retained_intron Homo_sapiens 0 527
ENST00000473295 SCN1A-005 retained_intron Homo_sapiens 0 248
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 7e-28 128
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 383
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 388
ENST00000619410 SCN7A-201 protein_coding Homo_sapiens 0 206
ENST00000621965 SCN7A-202 protein_coding Homo_sapiens 0 206

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