C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414095 NPM1P4-001 ENSG00000226703 9606 - 13:27696393-27697204 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverTestisENST00000414095
Transcript ID Adipose Adrenal Breast Heart Liver Testis
ENST00000414095 0.026±0.00 0.014±0.00 0.013±0.00 0.019±0.01 0.012±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0001 VISTA 13:27444442-28045997
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_00082E CIL_00082E_0001 VISTA 13:27521824-28123399
CIL_0004CM CIL_0004CM_0001 CGP 13:27620743-27794768

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 701
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 656
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 492
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 490
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 368
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 2e-39 167
ENSMUST00000144089 Zfp605-002 processed_transcript Mus_musculus 6e-34 148

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