C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidylprolyl isomerase A (cyclophilin A)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415933 PPIA-007 ENSG00000196262 9606 + 7:44796682-44801624 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverLungMuscleOvaryPlacentaENST00000415933
Transcript ID Heart Liver Lung Muscle Ovary Placenta
ENST00000415933 26.995±0.00 65.354±0.00 104.430±0.00 19.535±0.00 213.600±107.87 256.983±146.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SC CIL_0000SC_0001 CGP 7:44748581-44824564
CIL_0000SB CIL_0000SB_0001 CGP 7:44796680-44848083

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000413 IEA protein peptidyl-prolyl isomerization
GO:0003755 IEA peptidyl-prolyl cis-trans isomerase activity
GO:0006457 IEA protein folding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 534
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 510
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 475
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 468
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 453
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 442
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 398
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 342
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 331
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 270
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 0 270
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 0 270
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 2e-33 147
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 1e-31 141
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 1e-31 141
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 9e-23 111

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