C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | rhomboid 5 homolog 1 (Drosophila) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000417043  |
RHBDF1-005 |
ENSG00000007384 |
9606 | - |
16:62973-65037  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00094P | CIL_00094P_0001 | VISTA | 16:-195470-405616 |
| CIL_0008HK | CIL_0008HK_0001 | VISTA | 16:-187027-414801 |
| CIL_00015Q | CIL_00015Q_0001 | CGP | 16:53010-76355 |
| CIL_0007A5 | CIL_0007A5_0002 | CGP | 16:58059-85853 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0004252 | IEA | serine-type endopeptidase activity |
| GO:0006508 | IEA | proteolysis |
| GO:0016021 | IEA | integral component of membrane |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000143036
|
Rhbdf1-007 | retained_intron | Mus_musculus | 0 | 566 |
|
ENSMUST00000020524
|
Rhbdf1-006 | protein_coding | Mus_musculus | 0 | 566 |
|
ENSMUST00000132578
|
Rhbdf1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 324 |
|
ENSMUST00000146179
|
Rhbdf1-008 | nonsense_mediated_decay | Mus_musculus | 0 | 324 |
|
ENSMUST00000150381
|
Rhbdf1-001 | protein_coding | Mus_musculus | 3e-17 | 94 |
