C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide C pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417250 SNRPCP9-001 ENSG00000231812 9606 + 7:97885868-97886074 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverTestisENST00000417250
Transcript ID Bladder Brain Breast Kidney Liver Testis
ENST00000417250 4.439±0.00 1.103±0.00 0.398±0.24 0.150±0.00 1.870±0.00 0.136±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120526 Gm15197-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000071006 Snrpc-001 protein_coding Mus_musculus 0 189
ENSMUST00000058951 Gm8849-201 pseudogene Mus_musculus 0 187
ENSMUST00000119900 Gm12993-001 processed_pseudogene Mus_musculus 1.4013e-45 185
ENSMUST00000175770 Gm8974-001 processed_pseudogene Mus_musculus 4.2039e-45 183
ENSMUST00000173338 Gm2991-001 processed_pseudogene Mus_musculus 4.2039e-45 183
ENSMUST00000191160 RP23-298I7.3-001 processed_pseudogene Mus_musculus 4.2039e-45 183
ENSMUST00000137581 Snrpc-002 retained_intron Mus_musculus 2e-23 111

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