C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419967 PRPF31-201 ENSG00000105618 9606 + 19:54115410-54131719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLungMuscleTestisENST00000419967
Transcript ID Adrenal Brain Colon Heart Lung Muscle Testis
ENST00000419967 14.634±0.00 2.471±0.00 7.519±5.25 0.630±0.00 1.719±0.00 7.988±0.00 10.795±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0001 CGP 19:54102728-54115675
CIL_0005O3 CIL_0005O3_0001 CGP 19:54107013-54131719
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IEA spliceosomal tri-snRNP complex assembly
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008517 Prpf31-001 protein_coding Mus_musculus 0 1663
ENSMUST00000179769 Prpf31-201 protein_coding Mus_musculus 0 1557
ENSMUST00000108636 Prpf31-004 protein_coding Mus_musculus 0 1557
ENSMUST00000125782 Prpf31-003 retained_intron Mus_musculus 0 909
ENSMUST00000143231 Prpf31-002 retained_intron Mus_musculus 0 320

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