C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: glypican 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420138 GPC1-002 ENSG00000063660 9606 + 2:240452811-240466330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000420138
Transcript ID Placenta Testis
ENST00000420138 13.774±0.00 8.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TM CIL_0007TM_0001 VISTA 2:239957940-240560738
CIL_0009AE CIL_0009AE_0001 VISTA 2:240068562-240673577
CIL_0003NP CIL_0003NP_0001 CGP 2:240139026-240468078
CIL_0004UD CIL_0004UD_0002 CGP 2:240435671-240569209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0016020 IEA membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045970 Gpc1-001 protein_coding Mus_musculus 0 1664
ENSMUST00000190586 Gpc1-003 retained_intron Mus_musculus 0 645
ENSMUST00000190677 Gpc1-004 retained_intron Mus_musculus 0 322
ENSMUST00000190215 Gpc1-005 retained_intron Mus_musculus 0 259

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