C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and PHD finger containing, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424362 BRPF1-003 ENSG00000156983 9606 + 3:9731745-9748015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyMuscleOvaryPlacentaTestisENST00000424362
Transcript ID Adipose Adrenal Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000424362 2.433±0.00 3.064±0.00 0.259±0.00 1.503±0.00 2.849±0.00 3.635±0.00 2.008±1.21 2.196±0.64 4.813±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035Z CIL_00035Z_0001 CGP 3:9703807-9748018
CIL_0002WL CIL_0002WL_0001 CGP 3:9731729-9788219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043966 IDA histone H3 acetylation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070776 IDA MOZ/MORF histone acetyltransferase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113122 Brpf1-003 protein_coding Mus_musculus 0 5847
ENSMUST00000113121 Brpf1-004 protein_coding Mus_musculus 0 5723
ENSMUST00000113119 Brpf1-001 protein_coding Mus_musculus 0 4634
ENSMUST00000113117 Brpf1-002 protein_coding Mus_musculus 0 4396
ENSMUST00000131594 Brpf1-005 retained_intron Mus_musculus 0 870
ENSMUST00000138737 Brpf1-007 retained_intron Mus_musculus 0 424
ENSMUST00000124530 Brpf1-006 retained_intron Mus_musculus 0 285
ENSDART00000013083 brd1a-201 protein_coding Danio_rerio 0 211
ENSDART00000145083 brd1a-001 protein_coding Danio_rerio 0 211

Loading