C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088246 Tuba3a-201 ENSMUSG00000067702 10090 - 6:125278274-125286042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000088246
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000088246 0.029±0.00 0.016±0.00 0.040±0.04 0.291±0.07 0.072±0.03 0.294±0.08 0.246±0.08 0.041±0.03 0.095±0.02 2.452±1.02 0.271±0.08 1006.582±368.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1245
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1238
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1206
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1081
ENSDART00000062671 tuba8l-201 protein_coding Danio_rerio 0 1011
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 333
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1290
ENST00000292748 TUBA3FP-002 processed_transcript Homo_sapiens 0 675
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1759
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 1033
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1797
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1037
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1282
ENST00000400113 TUBA3C-002 protein_coding Homo_sapiens 0 1818
ENST00000409047 TUBA3D-003 processed_transcript Homo_sapiens 0 499
ENST00000410028 TUBA3GP-001 unprocessed_pseudogene Homo_sapiens 0 1280
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 1033
ENST00000422086 TUBA3FP-003 processed_transcript Homo_sapiens 0 675
ENST00000425551 TUBA4A-009 protein_coding Homo_sapiens 0 296
ENST00000427737 TUBA4A-010 protein_coding Homo_sapiens 0 516
ENST00000442739 TUBA3FP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 935
ENST00000447205 TUBA4A-003 protein_coding Homo_sapiens 0 422
ENST00000456818 TUBA4A-004 protein_coding Homo_sapiens 0 448
ENST00000462806 TUBA4A-007 retained_intron Homo_sapiens 0 322
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1033
ENST00000475683 TUBA4A-005 retained_intron Homo_sapiens 0 230
ENST00000618094 TUBA3C-201 protein_coding Homo_sapiens 0 1583

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