C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426688 RP3-445O10.1-001 ENSG00000235089 9606 + 1:81208568-81209210 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000426688
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000426688 0.124±0.00 0.213±0.00 0.028±0.00 0.138±0.00 0.201±0.00 0.071±0.00 0.081±0.00 0.047±0.00 0.103±0.00 0.503±0.00 0.139±0.00 0.084±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003A CIL_00003A_0002 CGP 1:78889764-81992436

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 660
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 0 357
ENSMUST00000141049 Rpl10a-007 retained_intron Mus_musculus 6e-38 161
ENSMUST00000128758 Rpl10a-006 retained_intron Mus_musculus 6e-38 161
ENSMUST00000143443 Rpl10a-004 retained_intron Mus_musculus 8e-37 158

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