C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13573
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116410 Gm13573-001 ENSMUSG00000080198 10090 - 2:60274944-60275574 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116410
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116410 0.144±0.05 0.098±0.00 0.210±0.00 4.389±6.11 0.125±0.00 0.328±0.17 0.139±0.08 0.288±0.13 0.894±0.16 0.505±0.52 1.015±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U0 CIL_0005U0_0002 CGP 2:60209887-60284488
CIL_0005TZ CIL_0005TZ_0002 CGP 2:60251993-60383303

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000136547 rpl10a-002 processed_transcript Danio_rerio 0 444
ENSDART00000062983 rpl10a-001 protein_coding Danio_rerio 0 444
ENSDART00000138427 rpl10a-004 nonsense_mediated_decay Danio_rerio 3e-21 106
ENSDART00000141110 rpl10a-003 retained_intron Danio_rerio 3e-21 106
ENST00000322203 RPL10A-001 protein_coding Homo_sapiens 0 680
ENST00000426688 RP3-445O10.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000464112 RPL10A-002 processed_transcript Homo_sapiens 0 675
ENST00000467020 RPL10A-005 processed_transcript Homo_sapiens 0 494
ENST00000472730 RPL10AP6-001 processed_pseudogene Homo_sapiens 0 623
ENST00000478340 RPL10A-004 processed_transcript Homo_sapiens 0 494
ENST00000479243 RPL10AP2-001 processed_pseudogene Homo_sapiens 0 603
ENST00000486625 CTD-2161E19.1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000490335 RPL10A-003 processed_transcript Homo_sapiens 0 411

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