C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428741 RP11-4K3__A.3-001 ENSG00000243659 9606 + 1:27311240-27311838 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyOvaryTestisENST00000428741
Transcript ID Adrenal Brain Breast Colon Heart Kidney Ovary Testis
ENST00000428741 0.276±0.00 0.490±0.00 0.303±0.00 0.439±0.00 0.035±0.00 0.257±0.00 0.534±0.00 0.172±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 289
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 281
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 274
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 274
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 272

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