C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434429 RP11-20O24.1-001 ENSG00000228665 9606 + 1:109030067-109030319 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000434429
Transcript ID Adipose Adrenal Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000434429 0.066±0.00 0.207±0.00 0.187±0.12 0.062±0.00 0.299±0.00 0.125±0.00 0.239±0.00 2.307±3.04 0.214±0.08 0.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053150 Rps27rt-001 protein_coding Mus_musculus 0 359
ENSMUST00000170122 Rps27-201 protein_coding Mus_musculus 0 359
ENSMUST00000118062 Gm15531-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000173599 Gm19246-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118179 Rps27-ps1-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000121307 Gm13009-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119164 Gm11572-001 processed_pseudogene Mus_musculus 5e-35 150

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