C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27, retrogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053150 Rps27rt-001 ENSMUSG00000050621 10090 - 9:114982371-114982740 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053150 659.785±223.02 37.447±8.54 812.165±672.10 368.148±253.26 650.477±272.87 284.220±46.41 233.751±16.52 318.913±24.60 435.190±366.20 330.827±14.65 347.913±45.07 528.966±145.82 366.100±262.74 285.726±134.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QW CIL_0002QW_0002 CGP 9:114899341-115232225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368567 RPS27-001 protein_coding Homo_sapiens 0 510
ENST00000392558 RPS27-002 protein_coding Homo_sapiens 0 231
ENST00000402023 RPS27P15-001 processed_pseudogene Homo_sapiens 0 318
ENST00000422457 RP11-175B9.3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000423216 RP3-423B22.5-001 processed_pseudogene Homo_sapiens 0 396
ENST00000425207 AC002075.4-001 processed_pseudogene Homo_sapiens 0 375
ENST00000426040 AC098614.1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000434429 RP11-20O24.1-001 processed_pseudogene Homo_sapiens 0 359
ENST00000438127 AP000936.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000455497 RP11-360D2.2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000457554 RP11-761N21.2-001 processed_pseudogene Homo_sapiens 0 418
ENST00000463110 RPS27P29-001 processed_pseudogene Homo_sapiens 0 375
ENST00000469695 AC090602.2-001 processed_pseudogene Homo_sapiens 0 339
ENST00000477151 RPS27-004 processed_transcript Homo_sapiens 0 460
ENST00000480875 RP11-10G12.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000486977 RP11-25I15.1-001 processed_pseudogene Homo_sapiens 0 394
ENST00000487608 RPS27P23-001 processed_pseudogene Homo_sapiens 0 320
ENST00000492051 RPS27P20-001 processed_pseudogene Homo_sapiens 0 211
ENST00000493224 RPS27-003 processed_transcript Homo_sapiens 0 455
ENST00000495392 RP11-543P15.1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000496370 RPS27P14-001 processed_pseudogene Homo_sapiens 0 318
ENST00000509147 RP11-147K6.2-001 processed_pseudogene Homo_sapiens 0 246
ENST00000604416 RP11-1029M24.4-001 processed_pseudogene Homo_sapiens 1.96182e-44 182
ENST00000611920 RPS27P14-001 processed_pseudogene Homo_sapiens 0 318

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