C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short stature homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441443 SHOX2-002 ENSG00000168779 9606 - 3:158096011-158106050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeENST00000441443
Transcript ID Adipose
ENST00000441443 2.917±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0001 VISTA 3:157571437-158172574
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0007399 TAS nervous system development
GO:0007507 TAS heart development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029422 Shox2-001 protein_coding Mus_musculus 0 1945
ENSMUST00000162098 Shox2-002 protein_coding Mus_musculus 0 843
ENSMUST00000162060 Shox2-004 protein_coding Mus_musculus 0 780
ENSMUST00000162439 Shox2-003 protein_coding Mus_musculus 0 520
ENSMUST00000162036 Rsrc1-001 protein_coding Mus_musculus 0 230

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