C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein H1 (H)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442819 HNRNPH1-005 ENSG00000169045 9606 - 5:179614179-179623721 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENST00000442819
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000442819 12.800±6.74 37.245±0.00 9.298±4.91 7.662±1.32 19.474±0.00 67.347±0.00 13.842±4.07 28.270±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 TAS RNA processing
GO:0008266 TAS poly(U) RNA binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069304 Hnrnph1-201 protein_coding Mus_musculus 0 2457
ENSMUST00000109142 Hnrnph1-005 protein_coding Mus_musculus 0 2457
ENSMUST00000077817 Hnrnph1-006 protein_coding Mus_musculus 0 2152
ENSMUST00000134230 Hnrnph1-009 processed_transcript Mus_musculus 0 2045
ENSMUST00000059297 Hnrnph2-002 protein_coding Mus_musculus 0 1760
ENSMUST00000113203 Hnrnph2-003 protein_coding Mus_musculus 0 1760
ENSMUST00000074950 Hnrnph2-001 protein_coding Mus_musculus 0 1760
ENSMUST00000113202 Hnrnph2-005 protein_coding Mus_musculus 0 1535
ENSMUST00000123371 Hnrnph1-008 processed_transcript Mus_musculus 0 1535
ENSMUST00000050331 Hnrnph2-004 protein_coding Mus_musculus 0 1430
ENSMUST00000170943 Gm8775-201 protein_coding Mus_musculus 0 1314
ENSMUST00000126737 Hnrnph1-007 processed_transcript Mus_musculus 0 1234
ENSMUST00000133435 Hnrnph1-013 processed_transcript Mus_musculus 0 926
ENSMUST00000129631 Hnrnph1-012 processed_transcript Mus_musculus 0 667
ENSMUST00000150153 Hnrnph1-011 processed_transcript Mus_musculus 0 667
ENSMUST00000156642 Hnrnph1-017 processed_transcript Mus_musculus 0 573
ENSMUST00000127964 Hnrnph1-010 processed_transcript Mus_musculus 0 525
ENSDART00000059918 hnrnph1-201 protein_coding Danio_rerio 0 508
ENSMUST00000141668 Hnrnph1-014 processed_transcript Mus_musculus 0 492
ENSDART00000015636 hnrnph1l-001 protein_coding Danio_rerio 0 488
ENSMUST00000140056 Hnrnph1-003 processed_transcript Mus_musculus 0 436
ENSMUST00000128220 Hnrnph1-015 processed_transcript Mus_musculus 0 416
ENSMUST00000132715 Hnrnph1-016 processed_transcript Mus_musculus 0 313
ENSMUST00000151537 Hnrnph1-004 processed_transcript Mus_musculus 0 309
ENSMUST00000118898 Hnrnph3-002 protein_coding Mus_musculus 0 252
ENSMUST00000020263 Hnrnph3-001 protein_coding Mus_musculus 0 252
ENSDART00000057651 HNRNPH3-201 protein_coding Danio_rerio 0 246
ENSDART00000113082 HNRNPH3-001 protein_coding Danio_rerio 0 246
ENSMUST00000143301 Hnrnph1-002 processed_transcript Mus_musculus 0 244
ENSMUST00000150657 Hnrnph1-001 processed_transcript Mus_musculus 0 220
ENSMUST00000173221 Setd1b-005 retained_intron Mus_musculus 0 200

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