C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a pseudogene 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445859 RPL36AP39-001 ENSG00000230980 9606 + 11:1792553-1792870 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLungOvaryTestisENST00000445859
Transcript ID Adipose Adrenal Breast Lung Ovary Testis
ENST00000445859 0.280±0.00 0.122±0.00 0.315±0.00 0.063±0.00 0.179±0.00 0.410±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_00048K CIL_00048K_0001 CGP 11:1752752-1837521

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 388
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 385
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 381
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 377
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 361
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 305
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 202
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 1.96182e-44 182

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