C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447385 AC020550.7-001 ENSG00000231699 9606 + 2:197533803-197533965 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaTestisENST00000447385
Transcript ID Colon Lung Ovary Placenta Testis
ENST00000447385 1.042±0.32 3.667±0.00 1.087±0.00 1.135±0.00 0.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368
CIL_00042D CIL_00042D_0002 CGP 2:197499994-197550726
CIL_00042C CIL_00042C_0002 CGP 2:197515571-197676045

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 9.94922e-44 178
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 9.94922e-44 178
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 5.00264e-43 176
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 1.99965e-42 174
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 1.99993e-41 171
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 8.99998e-41 169
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 3e-40 167
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 1e-39 165
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 2e-36 154
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 3e-35 150
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 5e-33 143
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 9e-31 135
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 5e-28 126

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