C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP56 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103198 Nop56-001 ENSMUSG00000027405 10090 + 2:130274430-130279313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverOvaryPlacentaENSMUST00000103198
Transcript ID Adipose Bladder Brain Liver Ovary Placenta
ENSMUST00000103198 35.974±0.10 27.148±6.13 56.174±3.61 77.752±30.82 33.297±3.94 41.136±16.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313
CIL_0000FV CIL_0000FV_0002 CGP 2:130274430-130284547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0005732 IEA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030515 IEA snoRNA binding
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070761 IEA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329276 NOP56-009 protein_coding Homo_sapiens 0 1912
ENST00000415272 NOP56-010 protein_coding Homo_sapiens 0 902
ENST00000445139 NOP56-016 protein_coding Homo_sapiens 0 732
ENST00000447491 NOP56P2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000462630 NOP56-005 processed_transcript Homo_sapiens 0 346
ENST00000466447 NOP56-006 processed_transcript Homo_sapiens 0 540
ENST00000467196 NOP56-007 nonsense_mediated_decay Homo_sapiens 0 998
ENST00000469588 NOP56-002 processed_transcript Homo_sapiens 0 891
ENST00000470143 NOP56-014 processed_transcript Homo_sapiens 0 289
ENST00000480447 NOP56-004 processed_transcript Homo_sapiens 0 538
ENST00000480992 NOP56-003 processed_transcript Homo_sapiens 0 769
ENST00000484998 NOP56-017 processed_transcript Homo_sapiens 0 582
ENST00000490753 NOP56-001 processed_transcript Homo_sapiens 0 532
ENST00000492135 NOP56-011 processed_transcript Homo_sapiens 0 580
ENST00000494697 NOP56-012 processed_transcript Homo_sapiens 0 287
ENST00000612233 NOP56-019 retained_intron Homo_sapiens 0 243
ENST00000616692 NOP56-020 retained_intron Homo_sapiens 0 303

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