C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448870 AC090804.1-001 ENSG00000230593 9606 - 11:3892398-3892887 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448870
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448870 0.210±0.00 0.725±0.00 0.101±0.00 0.264±0.23 0.512±0.39 0.192±0.16 0.063±0.00 0.285±0.00 1.084±0.00 2.542±0.00 0.487±0.41 0.068±0.00 0.163±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000G2 CIL_0000G2_0002 CGP 11:3826978-4093210
CIL_0005LF CIL_0005LF_0001 CGP 11:3854527-4138876

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 667
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 643
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 630
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 628
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 612
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 590
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 588
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 568
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 307
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 305
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 239
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 4e-34 148

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