C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005LF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167323-ENSG00000167325 CGP 9606 11:3854527-4138876
GeneTranscriptPositionBiotype
ENSG00000167323 (STIM1)
stromal interaction molecule 1 		ENST00000300737 (STIM1-001) 3855702-4093209 protein_coding
ENST00000524822 (STIM1-017) 3888087-4023987 protein_coding
ENST00000525055 (STIM1-007) 3903463-4055610 protein_coding
ENST00000525403 (STIM1-004) 3854527-4059337 protein_coding
ENST00000526156 (STIM1-011) 4086205-4091966 retained_intron
ENST00000526596 (STIM1-010) 4074519-4091669 protein_coding
ENST00000526771 (STIM1-019) 3989162-4070064 processed_transcript
ENST00000527484 (STIM1-020) 3999602-4070069 processed_transcript
ENST00000527651 (STIM1-002) 3856182-4091798 protein_coding
ENST00000528656 (STIM1-016) 3903463-4059356 protein_coding
ENST00000530554 (STIM1-018) 3868048-4055604 protein_coding
ENST00000531332 (STIM1-009) 4083157-4091433 retained_intron
ENST00000532610 (STIM1-015) 3867103-4059403 protein_coding
ENST00000532919 (STIM1-005) 3867307-4070052 protein_coding
ENST00000532990 (STIM1-006) 3947343-4055565 protein_coding
ENST00000533343 (STIM1-008) 4082205-4083654 retained_intron
ENST00000533445 (STIM1-014) 4055523-4082221 processed_transcript
ENST00000533977 (STIM1-003) 4058749-4092126 protein_coding
ENST00000534707 (STIM1-013) 4088573-4089085 processed_transcript
ENST00000616714 (STIM1-201) 3855703-4093210 protein_coding
ENSG00000167325 (RRM1)
ribonucleotide reductase M1 		ENST00000300738 (RRM1-001) 4094809-4138876 protein_coding
ENST00000526304 (RRM1-012) 4119062-4123270 processed_transcript
ENST00000526350 (RRM1-010) 4094852-4107570 retained_intron
ENST00000526865 (RRM1-009) 4094805-4106147 processed_transcript
ENST00000528442 (RRM1-014) 4111975-4123384 nonsense_mediated_decay
ENST00000528470 (RRM1-013) 4119069-4123271 processed_transcript
ENST00000529109 (RRM1-015) 4122109-4126817 retained_intron
ENST00000530368 (RRM1-011) 4101928-4106223 retained_intron
ENST00000531591 (RRM1-016) 4121675-4126949 retained_intron
ENST00000532170 (RRM1-017) 4094799-4138870 nonsense_mediated_decay
ENST00000532710 (RRM1-008) 4094707-4107480 processed_transcript
ENST00000533349 (RRM1-003) 4094843-4138875 nonsense_mediated_decay
ENST00000533495 (RRM1-006) 4116243-4138875 nonsense_mediated_decay
ENST00000534285 (RRM1-005) 4116078-4138446 protein_coding
ENSG00000206976 (SNORA7)
Small nucleolar RNA SNORA7 		ENST00000384249 (SNORA7.1-204) 3922567-3922703 snoRNA
ENSG00000230593 (AC090804.1)
 ENST00000448870 (AC090804.1-001) 3892398-3892887 processed_pseudogene
ENSG00000240385 (RPS29P20)
ribosomal protein S29 pseudogene 20 		ENST00000489592 (RPS29P20-001) 4018948-4019118 processed_pseudogene
ENSG00000255141 (HNRNPA1P76)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 76 		ENST00000529475 (HNRNPA1P76-001) 3972881-3974237 processed_pseudogene
ENSG00000255232 (RP11-438N5.4)
 ENST00000529141 (RP11-438N5.4-001) 3961277-3961538 processed_pseudogene
CIL_0005LF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030987-ENSMUSG00000030978 CGP 10090 7:102267824-102469771
GeneTranscriptPositionBiotype
ENSMUSG00000030978 (Rrm1)
ribonucleotide reductase M1 		ENSMUST00000033283 (Rrm1-201) 102441695-102469771 protein_coding
ENSMUSG00000030987 (Stim1)
stromal interaction molecule 1 		ENSMUST00000033289 (Stim1-201) 102267824-102436848 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LF_0001ENSG00000167323ENST00000300737ENST00000526156ENST00000526596ENST00000526771ENST00000527651ENST00000616714ENSG00000167325ENST00000300738ENST00000526304ENST00000531591ENST00000533349ENST00000533495ENST00000534285ENSG00000206976ENST00000384249ENSG00000230593ENST00000448870ENSG00000240385ENST00000489592ENSG00000255141ENST00000529475ENSG00000255232ENST00000529141CIL_0005LF_0002ENSMUSG00000030978ENSMUST00000033283ENSMUSG00000030987ENSMUST00000033289
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167323 ENST00000300737 7.928±0.00 13.025±0.00 N/A 13.532±0.00 10.952±8.55 7.118±1.42 2.600±1.99 5.215±1.87 6.087±3.02 12.947±0.00 20.396±17.74 12.110±6.21 12.156±2.47 11.541±0.81
ENST00000524822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526156 N/A N/A 1.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526596 9.716±0.00 12.014±0.00 0.912±0.00 13.472±0.00 21.549±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.783±0.00 25.996±0.00
ENST00000527484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527651 N/A N/A N/A N/A 1.552±0.00 N/A 0.319±0.00 4.444±0.00 N/A 1.728±0.00 3.057±0.00 2.686±0.00 N/A N/A
ENST00000528656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616714 N/A N/A N/A 2.178±0.00 N/A N/A N/A N/A 1.303±0.00 1.106±0.00 9.557±4.64 N/A N/A N/A
ENSG00000167325 ENST00000300738 7.826±0.00 4.105±0.00 2.043±0.00 5.284±0.26 8.881±3.66 4.815±0.25 3.750±1.05 3.631±0.71 4.102±1.91 3.962±0.06 7.489±6.03 9.306±2.72 13.526±3.58 6.171±1.21
ENST00000526304 N/A N/A N/A N/A N/A N/A N/A 7.979±0.00 N/A N/A 6.123±0.00 N/A N/A 12.778±0.00
ENST00000526350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531591 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.590±0.00 N/A N/A N/A N/A
ENST00000532170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533349 N/A 1.616±0.00 N/A N/A N/A 3.213±0.00 N/A N/A N/A 1.077±0.00 N/A 4.911±0.00 6.615±0.00 4.061±1.31
ENST00000533495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.341±0.00
ENST00000534285 N/A N/A 1.211±0.00 3.093±0.00 N/A N/A 1.643±0.10 1.416±0.00 5.346±0.00 1.398±0.00 2.287±0.00 5.137±0.00 N/A N/A
ENSG00000206976 ENST00000384249 N/A 1.019±0.00 N/A N/A 1.070±0.00 2.863±0.00 N/A N/A 20.041±0.00 N/A N/A N/A N/A N/A
ENSG00000230593 ENST00000448870 0.210±0.00 0.725±0.00 N/A 0.101±0.00 0.264±0.23 0.512±0.39 0.192±0.16 0.063±0.00 0.285±0.00 1.084±0.00 2.542±0.00 0.487±0.41 0.068±0.00 0.163±0.10
ENSG00000240385 ENST00000489592 N/A N/A N/A N/A 0.228±0.00 N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A 0.398±0.00
ENSG00000255141 ENST00000529475 0.062±0.00 0.114±0.00 0.451±0.00 0.036±0.00 N/A 0.316±0.27 N/A 0.592±0.00 N/A N/A 0.385±0.00 0.121±0.11 N/A 0.048±0.00
ENSG00000255232 ENST00000529141 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.658±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030978 ENSMUST00000033283 7.795±4.92 4.860±0.95 2.941±0.57 12.717±6.38 5.166±0.42 5.647±1.26 2.141±0.42 3.542±0.19 30.991±34.01 5.620±0.46 4.970±2.15 12.704±3.89 27.672±17.85 14.524±12.18
ENSMUSG00000030987 ENSMUST00000033289 16.259±5.41 25.118±3.24 31.959±0.39 8.224±4.03 30.112±7.93 59.135±4.06 4.260±1.78 7.297±1.08 8.962±2.47 22.942±2.74 48.126±5.19 17.128±6.69 20.461±14.90 37.719±9.65

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