C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid 5 homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448893 RHBDF1-008 ENSG00000007384 9606 - 16:58137-59762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000448893
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000448893 1.900±0.00 1.292±0.00 5.072±0.00 0.815±0.00 1.809±0.52 0.955±0.00 1.128±0.60 11.667±0.00 9.546±5.06 20.881±0.00 2.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355
CIL_0007A5 CIL_0007A5_0002 CGP 16:58059-85853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143988 Rhbdf1-009 protein_coding Mus_musculus 0 976
ENSMUST00000146179 Rhbdf1-008 nonsense_mediated_decay Mus_musculus 0 741
ENSMUST00000143036 Rhbdf1-007 retained_intron Mus_musculus 0 741
ENSMUST00000020524 Rhbdf1-006 protein_coding Mus_musculus 0 741
ENSMUST00000142274 Rhbdf1-005 retained_intron Mus_musculus 0 545
ENSMUST00000137125 Rhbdf1-004 retained_intron Mus_musculus 0 241

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