C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 120B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449592 TMEM120B-002 ENSG00000188735 9606 + 12:121712795-121782062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000449592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000449592 0.576±0.00 2.876±0.00 0.665±0.00 0.247±0.00 4.801±0.00 0.637±0.15 0.696±0.00 0.745±0.54 0.462±0.00 1.453±0.00 1.547±0.00 2.017±0.42 0.501±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074R CIL_00074R_0002 CGP 12:121651118-121783001
CIL_0000F9 CIL_0000F9_0002 CGP 12:121712752-121803403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067505 Tmem120b-001 protein_coding Mus_musculus 0 1330
ENSMUST00000111619 Tmem120b-002 protein_coding Mus_musculus 0 929
ENSMUST00000161049 Tmem120b-006 retained_intron Mus_musculus 0 743
ENSMUST00000186469 Rhof-201 protein_coding Mus_musculus 2.00386e-43 183
ENSMUST00000031401 Rhof-001 protein_coding Mus_musculus 2.00386e-43 183
ENSMUST00000160479 Rhof-003 nonsense_mediated_decay Mus_musculus 2.00386e-43 183
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.0001 55

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