C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450510 HOXD8-003 ENSG00000175879 9606 + 2:176130357-176132000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLungMuscleOvaryPlacentaTestisENST00000450510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000450510 6.630±0.00 3.579±0.00 2.572±0.00 0.014±0.00 2.154±0.40 4.501±0.00 0.367±0.00 0.859±0.00 4.128±3.90 0.338±0.24 6.931±3.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017L CIL_00017L_0001 CGP 2:176122720-176132695
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008595 NAS anterior/posterior axis specification, embryo
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074721 Hoxd8-002 protein_coding Mus_musculus 0 1410
ENSMUST00000019749 Hoxd8-001 protein_coding Mus_musculus 0 1395
ENSMUST00000151380 Hoxd8-003 protein_coding Mus_musculus 0 588
ENSDART00000046638 hoxb8a-001 protein_coding Danio_rerio 1e-18 99
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0.000000000005 77

Loading