C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450819 RPL35P1-001 ENSG00000237991 9606 + 1:236981339-236981708 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeMuscleOvaryPlacentaTestisENST00000450819
Transcript ID Adipose Muscle Ovary Placenta Testis
ENST00000450819 0.062±0.00 0.059±0.00 1.332±0.72 0.512±0.31 0.125±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IY CIL_0008IY_0001 VISTA 1:236697312-237300217
CIL_0008J9 CIL_0008J9_0001 VISTA 1:236711218-237313545
CIL_0008J8 CIL_0008J8_0001 VISTA 1:236729167-237332656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 401
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 396
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 390
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 385
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000118070 Rpl35-ps1-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 0 255
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 255
ENSMUST00000119868 Gm13717-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 4e-33 145

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