C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451325 RP11-445P17.5-001 ENSG00000223987 9606 - 10:5304431-5304865 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000451325
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000451325 0.031±0.00 0.066±0.00 0.034±0.00 0.033±0.00 0.121±0.00 0.059±0.00 0.098±0.00 0.086±0.00 0.062±0.00 0.150±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097T CIL_00097T_0001 VISTA 10:5274654-5878045
CIL_0008HB CIL_0008HB_0001 VISTA 10:5286025-5887846

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183196 Gm10136-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000167436 Rpl26-201 protein_coding Mus_musculus 0 353
ENSMUST00000073471 Rpl26-001 protein_coding Mus_musculus 0 353
ENSMUST00000118533 Gm15772-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000118781 Gm11826-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000101014 Rpl26-002 protein_coding Mus_musculus 0 326
ENSMUST00000122220 Rpl26-ps5-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000170279 Rpl26-ps4-201 processed_pseudogene Mus_musculus 0 303
ENSMUST00000085379 Rpl26-ps2-201 processed_pseudogene Mus_musculus 0 292
ENSMUST00000118045 Gm15896-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000128952 Rpl26-003 protein_coding Mus_musculus 0 261
ENSMUST00000122414 Gm11506-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000118758 Gm12871-001 processed_pseudogene Mus_musculus 2e-31 139

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