C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167436 Rpl26-201 ENSMUSG00000060938 10090 + 11:68901635-68904533 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057944 rpl26-001 protein_coding Danio_rerio 0 405
ENST00000293842 RPL26-001 protein_coding Homo_sapiens 0 525
ENST00000414397 RP11-524O24.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000424037 RP11-416L21.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000431047 AC005534.6-001 processed_pseudogene Homo_sapiens 0 420
ENST00000450941 AC022431.1-001 processed_pseudogene Homo_sapiens 0 481
ENST00000451325 RP11-445P17.5-001 processed_pseudogene Homo_sapiens 0 353
ENST00000472981 RP11-796G6.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000495104 RP11-366M4.2-001 processed_pseudogene Homo_sapiens 0 422
ENST00000495560 AC090453.1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000578115 RPL26-002 retained_intron Homo_sapiens 0 231
ENST00000578812 RPL26-003 protein_coding Homo_sapiens 0 375
ENST00000582471 KRBA2-001 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000582485 RPL26-013 protein_coding Homo_sapiens 0 438
ENST00000582556 RPL26-005 protein_coding Homo_sapiens 0 531
ENST00000583011 RPL26-007 protein_coding Homo_sapiens 0 525
ENST00000583515 RPL26-006 protein_coding Homo_sapiens 0 348
ENST00000584164 RPL26-004 protein_coding Homo_sapiens 0 525
ENST00000584343 RPL26-008 protein_coding Homo_sapiens 0 387
ENST00000584906 RPL26-010 nonsense_mediated_decay Homo_sapiens 0 228

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