C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452193 SMARCA2-011 ENSG00000080503 9606 + 9:2157680-2186154 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624
CIL_0007PU CIL_0007PU_0001 VISTA 9:1940936-2542833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175842 Smarca2-015 protein_coding Mus_musculus 0 778
ENSMUST00000176698 Smarca2-011 protein_coding Mus_musculus 0 776
ENSMUST00000175791 Smarca2-010 protein_coding Mus_musculus 0 776
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 776
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 394
ENSMUST00000112637 Smarca2-007 protein_coding Mus_musculus 0 390
ENSMUST00000176475 Smarca2-009 protein_coding Mus_musculus 0 390
ENSMUST00000177252 Smarca2-016 protein_coding Mus_musculus 0 390
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 390
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 390
ENSMUST00000177484 Smarca2-014 protein_coding Mus_musculus 0 385
ENSMUST00000177116 Smarca2-018 protein_coding Mus_musculus 0 385
ENSMUST00000176700 Smarca2-019 retained_intron Mus_musculus 0 303
ENSMUST00000175953 Smarca2-017 protein_coding Mus_musculus 0 300
ENSMUST00000176494 Smarca2-008 processed_transcript Mus_musculus 0 209
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 8e-38 161

Loading