C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175935 Smarca2-004 ENSMUSG00000024921 10090 + 19:26681010-26751934 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENSMUST00000175935
Transcript ID Brain Ovary Testis
ENSMUST00000175935 65.012±0.00 67.421±0.00 82.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 1129
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 909
ENST00000302401 SMARCA2-001 protein_coding Homo_sapiens 2e-37 161
ENST00000324954 SMARCA2-201 protein_coding Homo_sapiens 2e-37 161
ENST00000344626 SMARCA4-001 protein_coding Homo_sapiens 0 857
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 2119
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 2119
ENST00000382183 SMARCA2-013 protein_coding Homo_sapiens 1e-37 161
ENST00000382185 SMARCA2-009 protein_coding Homo_sapiens 2e-37 161
ENST00000382186 SMARCA2-010 protein_coding Homo_sapiens 1e-37 161
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 2119
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 2119
ENST00000413806 SMARCA4-201 protein_coding Homo_sapiens 0 1081
ENST00000416751 SMARCA2-015 protein_coding Homo_sapiens 6e-38 161
ENST00000417599 SMARCA2-012 protein_coding Homo_sapiens 9e-38 161
ENST00000423555 SMARCA2-014 protein_coding Homo_sapiens 6e-38 161
ENST00000429416 SMARCA4-007 protein_coding Homo_sapiens 0 857
ENST00000444061 SMARCA4-003 protein_coding Homo_sapiens 0 1116
ENST00000450717 SMARCA4-202 protein_coding Homo_sapiens 0 857
ENST00000452193 SMARCA2-011 protein_coding Homo_sapiens 8e-38 161
ENST00000541122 SMARCA4-005 protein_coding Homo_sapiens 0 1081
ENST00000585799 SMARCA4-011 retained_intron Homo_sapiens 0 1081
ENST00000589677 SMARCA4-004 protein_coding Homo_sapiens 0 1081
ENST00000590574 SMARCA4-002 protein_coding Homo_sapiens 0 1116
ENST00000591545 SMARCA4-009 retained_intron Homo_sapiens 0 627
ENST00000591595 SMARCA4-010 retained_intron Homo_sapiens 0 1116
ENST00000592158 SMARCA4-018 protein_coding Homo_sapiens 7e-26 121
ENST00000592604 SMARCA4-008 retained_intron Homo_sapiens 0 1081

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