C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089912 Casc4-002 ENSMUSG00000060227 10090 + 2:121867130-121935866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089912
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089912 0.342±0.04 1.144±0.00 7.144±3.09 1.374±0.00 0.784±0.00 2.026±0.75 0.722±0.00 4.097±1.32 0.368±0.15 4.221±0.41 0.905±0.21 3.100±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299957 CASC4-001 protein_coding Homo_sapiens 0 1059
ENST00000345795 CASC4-002 protein_coding Homo_sapiens 0 1059
ENST00000429162 CASC4-004 processed_transcript Homo_sapiens 0 488
ENST00000456608 CASC4P1-001 processed_pseudogene Homo_sapiens 0 933
ENST00000557945 CASC4-005 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000558735 CASC4-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000558847 CASC4-009 protein_coding Homo_sapiens 0 196
ENST00000559222 CASC4-006 protein_coding Homo_sapiens 0 728

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