C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136023 Casc4-007 ENSMUSG00000060227 10090 + 2:121898807-121933662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000136023
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000136023 15.670±0.00 14.170±2.64 4.284±0.33 16.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299957 CASC4-001 protein_coding Homo_sapiens 0 841
ENST00000345795 CASC4-002 protein_coding Homo_sapiens 0 1022
ENST00000456608 CASC4P1-001 processed_pseudogene Homo_sapiens 0 763
ENST00000557945 CASC4-005 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000558847 CASC4-009 protein_coding Homo_sapiens 0 466
ENST00000559222 CASC4-006 protein_coding Homo_sapiens 0 422

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