C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00097L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs914 VISTA 9606 20:20934152-21536594
GeneTranscriptPositionBiotype
ENSG00000088930 (XRN2)
5'-3' exoribonuclease 2 		ENST00000377191 (XRN2-001) 21303304-21389827 protein_coding
ENSG00000125816 (NKX2-4)
NK2 homeobox 4 		ENST00000351817 (NKX2-4-001) 21395367-21398028 protein_coding
ENSG00000125820 (NKX2-2)
NK2 homeobox 2 		ENST00000377142 (NKX2-2-001) 21511010-21514026 protein_coding
ENSG00000199509 (RNA5SP477)
RNA, 5S ribosomal pseudogene 477 		ENST00000362639 (RNA5SP477-201) 21138956-21139074 rRNA
ENSG00000214535 (RPS15AP1)
ribosomal protein S15a pseudogene 1 		ENST00000457423 (RPS15AP1-001) 21166206-21166596 processed_pseudogene
ENSG00000223128 (RN7SKP140)
RNA, 7SK small nuclear pseudogene 140 		ENST00000411196 (RN7SKP140-201) 21424758-21425041 misc_RNA
ENSG00000225127 (LINC00237)
long intergenic non-protein coding RNA 237 		ENST00000420705 (LINC00237-002) 21093558-21106334 lincRNA
ENST00000455890 (LINC00237-003) 21092809-21101559 lincRNA
ENST00000593272 (LINC00237-004) 21087604-21106358 lincRNA
ENSG00000225280 (RP11-227D2.3)
 ENST00000419666 (RP11-227D2.3-001) 21398893-21400391 antisense
ENST00000552439 (RP11-227D2.3-002) 21397818-21399366 antisense
ENSG00000226405 (RP5-984P4.1)
 ENST00000421090 (RP5-984P4.1-001) 21488244-21488625 processed_pseudogene
ENSG00000227693 (GSTM3P1)
glutathione S-transferase mu 3 pseudogene 1 		ENST00000447621 (GSTM3P1-001) 21501395-21501968 processed_pseudogene
ENSG00000234104 (RP5-1177M21.1)
 ENST00000432942 (RP5-1177M21.1-001) 20970448-20972562 lincRNA
ENSG00000235065 (RPL24P2)
ribosomal protein L24 pseudogene 2 		ENST00000421023 (RPL24P2-001) 21114723-21115197 processed_pseudogene
ENSG00000258197 (NKX2-2-AS1)
NKX2-2 antisense RNA 1 		ENST00000549659 (NKX2-2-AS1-001) 21511447-21512309 antisense
ENSG00000278041 (RP5-984P4.6)
 ENST00000622757 (RP5-984P4.6-001) 21499261-21502934 lincRNA
CIL_00097L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs914 VISTA 10090 2:146657766-147260813
GeneTranscriptPositionBiotype
ENSMUSG00000027433 (Xrn2)
5'-3' exoribonuclease 2 		ENSMUST00000028921 (Xrn2-001) 147012996-147078000 protein_coding
ENSMUST00000136136 (Xrn2-003) 147042546-147047822 retained_intron
ENSMUST00000137358 (Xrn2-004) 147061440-147068900 retained_intron
ENSMUST00000147057 (Xrn2-002) 147029552-147038287 retained_intron
ENSMUSG00000027434 (Nkx2-2)
NK2 homeobox 2 		ENSMUST00000067075 (Nkx2-2-002) 147183083-147186404 protein_coding
ENSMUST00000109969 (Nkx2-2-003) 147186305-147194243 processed_transcript
ENSMUST00000109970 (Nkx2-2-001) 147177546-147186101 protein_coding
ENSMUST00000172627 (Nkx2-2-004) 147186382-147194242 processed_transcript
ENSMUSG00000053545 (6430503K07Rik)
RIKEN cDNA 6430503K07 gene 		ENSMUST00000144411 (6430503K07Rik-001) 147187424-147188407 antisense
ENSMUSG00000054160 (Nkx2-4)
NK2 homeobox 4 		ENSMUST00000067020 (Nkx2-4-001) 147083316-147085445 protein_coding
ENSMUSG00000074749 (Kiz)
kizuna centrosomal protein 		ENSMUST00000099278 (Kiz-001) 146855864-146970097 protein_coding
ENSMUST00000135595 (Kiz-003) 146952883-146970092 retained_intron
ENSMUST00000156232 (Kiz-002) 146855909-146889295 protein_coding
ENSMUSG00000080870 (Gm14111)
predicted gene 14111 		ENSMUST00000119851 (Gm14111-001) 146754707-146755705 processed_pseudogene
ENSMUSG00000082158 (Gm14116)
predicted gene 14116 		ENSMUST00000117733 (Gm14116-001) 147146408-147147212 processed_pseudogene
ENSMUSG00000086509 (Nkx2-2os)
NK2 homeobox 2, opposite strand 		ENSMUST00000136998 (Nkx2-2os-001) 147184083-147331681 antisense
ENSMUSG00000087618 (Gm14114)
predicted gene 14114 		ENSMUST00000139345 (Gm14114-001) 146828327-146839732 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097L_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000199509ENST00000362639ENSG00000214535ENST00000457423ENSG00000223128ENST00000411196ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225280ENST00000419666ENST00000552439ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_00097L_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000136136ENSMUST00000137358ENSMUST00000147057ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUST00000172627ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000074749ENSMUST00000099278ENSMUST00000135595ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998ENSMUSG00000087618ENSMUST00000139345
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097L_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000199509ENST00000362639ENSG00000214535ENST00000457423ENSG00000223128ENST00000411196ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225280ENST00000419666ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_00097L_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000137358ENSMUST00000147057ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000074749ENSMUST00000099278ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998ENSMUSG00000087618ENSMUST00000139345
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088930 ENST00000377191 17.612±0.00 15.565±0.00 1.532±0.00 3.453±1.28 10.045±1.85 8.251±3.12 6.860±3.72 11.647±4.07 6.414±0.81 7.453±4.14 8.171±7.57 14.247±6.28 16.650±3.03 21.002±0.33
ENSG00000125816 ENST00000351817 N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.87
ENSG00000125820 ENST00000377142 0.045±0.00 0.011±0.00 N/A 1.116±0.64 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSG00000199509 ENST00000362639 N/A 0.224±0.00 N/A 0.489±0.00 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00
ENSG00000214535 ENST00000457423 0.117±0.00 0.167±0.00 0.218±0.00 0.124±0.04 1.728±0.00 0.156±0.00 0.158±0.06 0.252±0.00 0.259±0.00 0.280±0.00 1.099±0.00 0.854±0.98 0.450±0.33 0.313±0.20
ENSG00000223128 ENST00000411196 N/A N/A N/A 1.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225127 ENST00000420705 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A 0.359±0.00
ENST00000455890 0.065±0.00 0.023±0.00 N/A 0.205±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.140±0.00 N/A 0.139±0.00
ENST00000593272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 N/A 0.072±0.00
ENSG00000225280 ENST00000419666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000552439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226405 ENST00000421090 N/A N/A N/A 0.104±0.00 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227693 ENST00000447621 N/A N/A N/A 0.494±0.24 N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A 0.441±0.23
ENSG00000234104 ENST00000432942 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235065 ENST00000421023 6.025±0.00 5.354±0.00 N/A 0.854±0.00 2.282±2.20 3.918±0.00 1.328±0.00 1.628±0.00 0.795±0.00 5.534±0.00 3.719±0.00 1.032±0.62 0.631±0.26 1.970±1.78
ENSG00000258197 ENST00000549659 0.081±0.00 N/A N/A 2.496±1.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.06
ENSG00000278041 ENST00000622757 0.004±0.00 0.024±0.00 N/A 0.491±0.25 0.066±0.05 0.021±0.00 N/A 0.020±0.00 N/A N/A N/A 0.006±0.00 0.024±0.00 0.232±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027433 ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87
ENSMUST00000136136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137358 N/A 3.904±0.29 N/A N/A N/A 8.000±1.18 N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.492±0.00 43.586±0.00 50.204±0.00
ENSMUSG00000027434 ENSMUST00000067075 N/A N/A N/A 1.254±0.57 N/A 0.212±0.09 N/A N/A 0.013±0.01 0.013±0.00 N/A N/A 0.006±0.00 0.014±0.00
ENSMUST00000109969 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENSMUST00000109970 N/A N/A N/A 1.244±0.47 N/A 0.801±0.26 N/A N/A N/A N/A 0.062±0.00 N/A 0.075±0.03 N/A
ENSMUST00000172627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053545 ENSMUST00000144411 N/A N/A N/A 0.315±0.00 N/A 0.218±0.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054160 ENSMUST00000067020 0.031±0.00 N/A 0.013±0.00 0.728±0.52 0.014±0.00 N/A N/A N/A 0.004±0.00 0.018±0.01 N/A 0.027±0.00 0.030±0.01 0.765±0.61
ENSMUSG00000074749 ENSMUST00000099278 2.718±0.50 1.273±0.57 8.198±0.69 5.120±1.26 3.949±0.74 2.072±0.61 8.538±0.76 4.812±0.78 3.344±0.90 5.166±0.57 7.943±0.62 5.651±5.51 3.408±1.34 60.870±18.49
ENSMUST00000135595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156232 N/A 1.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080870 ENSMUST00000119851 0.151±0.06 0.173±0.08 0.020±0.00 0.049±0.03 0.177±0.07 0.223±0.07 0.225±0.09 0.263±0.07 0.071±0.05 0.097±0.04 0.136±0.05 0.230±0.15 0.050±0.04 0.058±0.03
ENSMUSG00000082158 ENSMUST00000117733 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
ENSMUSG00000086509 ENSMUST00000136998 N/A N/A N/A 0.164±0.06 N/A 0.136±0.04 N/A 0.011±0.00 0.002±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.010±0.01
ENSMUSG00000087618 ENSMUST00000139345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A

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