C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00097L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs914 VISTA 9606 20:20934152-21536594
GeneTranscriptPositionBiotype
ENSG00000088930 (XRN2)
5'-3' exoribonuclease 2 		ENST00000377191 (XRN2-001) 21303304-21389827 protein_coding
ENSG00000125816 (NKX2-4)
NK2 homeobox 4 		ENST00000351817 (NKX2-4-001) 21395367-21398028 protein_coding
ENSG00000125820 (NKX2-2)
NK2 homeobox 2 		ENST00000377142 (NKX2-2-001) 21511010-21514026 protein_coding
ENSG00000199509 (RNA5SP477)
RNA, 5S ribosomal pseudogene 477 		ENST00000362639 (RNA5SP477-201) 21138956-21139074 rRNA
ENSG00000214535 (RPS15AP1)
ribosomal protein S15a pseudogene 1 		ENST00000457423 (RPS15AP1-001) 21166206-21166596 processed_pseudogene
ENSG00000223128 (RN7SKP140)
RNA, 7SK small nuclear pseudogene 140 		ENST00000411196 (RN7SKP140-201) 21424758-21425041 misc_RNA
ENSG00000225127 (LINC00237)
long intergenic non-protein coding RNA 237 		ENST00000420705 (LINC00237-002) 21093558-21106334 lincRNA
ENST00000455890 (LINC00237-003) 21092809-21101559 lincRNA
ENST00000593272 (LINC00237-004) 21087604-21106358 lincRNA
ENSG00000225280 (RP11-227D2.3)
 ENST00000419666 (RP11-227D2.3-001) 21398893-21400391 antisense
ENST00000552439 (RP11-227D2.3-002) 21397818-21399366 antisense
ENSG00000226405 (RP5-984P4.1)
 ENST00000421090 (RP5-984P4.1-001) 21488244-21488625 processed_pseudogene
ENSG00000227693 (GSTM3P1)
glutathione S-transferase mu 3 pseudogene 1 		ENST00000447621 (GSTM3P1-001) 21501395-21501968 processed_pseudogene
ENSG00000234104 (RP5-1177M21.1)
 ENST00000432942 (RP5-1177M21.1-001) 20970448-20972562 lincRNA
ENSG00000235065 (RPL24P2)
ribosomal protein L24 pseudogene 2 		ENST00000421023 (RPL24P2-001) 21114723-21115197 processed_pseudogene
ENSG00000258197 (NKX2-2-AS1)
NKX2-2 antisense RNA 1 		ENST00000549659 (NKX2-2-AS1-001) 21511447-21512309 antisense
ENSG00000278041 (RP5-984P4.6)
 ENST00000622757 (RP5-984P4.6-001) 21499261-21502934 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00097L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs914 VISTA 10090 2:146657766-147260813
GeneTranscriptPositionBiotype
ENSMUSG00000027433 (Xrn2)
5'-3' exoribonuclease 2 		ENSMUST00000028921 (Xrn2-001) 147012996-147078000 protein_coding
ENSMUST00000136136 (Xrn2-003) 147042546-147047822 retained_intron
ENSMUST00000137358 (Xrn2-004) 147061440-147068900 retained_intron
ENSMUST00000147057 (Xrn2-002) 147029552-147038287 retained_intron
ENSMUSG00000027434 (Nkx2-2)
NK2 homeobox 2 		ENSMUST00000067075 (Nkx2-2-002) 147183083-147186404 protein_coding
ENSMUST00000109969 (Nkx2-2-003) 147186305-147194243 processed_transcript
ENSMUST00000109970 (Nkx2-2-001) 147177546-147186101 protein_coding
ENSMUST00000172627 (Nkx2-2-004) 147186382-147194242 processed_transcript
ENSMUSG00000053545 (6430503K07Rik)
RIKEN cDNA 6430503K07 gene 		ENSMUST00000144411 (6430503K07Rik-001) 147187424-147188407 antisense
ENSMUSG00000054160 (Nkx2-4)
NK2 homeobox 4 		ENSMUST00000067020 (Nkx2-4-001) 147083316-147085445 protein_coding
ENSMUSG00000074749 (Kiz)
kizuna centrosomal protein 		ENSMUST00000099278 (Kiz-001) 146855864-146970097 protein_coding
ENSMUST00000135595 (Kiz-003) 146952883-146970092 retained_intron
ENSMUST00000156232 (Kiz-002) 146855909-146889295 protein_coding
ENSMUSG00000080870 (Gm14111)
predicted gene 14111 		ENSMUST00000119851 (Gm14111-001) 146754707-146755705 processed_pseudogene
ENSMUSG00000082158 (Gm14116)
predicted gene 14116 		ENSMUST00000117733 (Gm14116-001) 147146408-147147212 processed_pseudogene
ENSMUSG00000086509 (Nkx2-2os)
NK2 homeobox 2, opposite strand 		ENSMUST00000136998 (Nkx2-2os-001) 147184083-147331681 antisense
ENSMUSG00000087618 (Gm14114)
predicted gene 14114 		ENSMUST00000139345 (Gm14114-001) 146828327-146839732 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097L_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000199509ENST00000362639ENSG00000214535ENST00000457423ENSG00000223128ENST00000411196ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225280ENST00000419666ENST00000552439ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_00097L_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000136136ENSMUST00000137358ENSMUST00000147057ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUST00000172627ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000074749ENSMUST00000099278ENSMUST00000135595ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998ENSMUSG00000087618ENSMUST00000139345
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097L_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000125820ENST00000377142ENSG00000199509ENST00000362639ENSG00000214535ENST00000457423ENSG00000223128ENST00000411196ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225280ENST00000419666ENSG00000226405ENST00000421090ENSG00000227693ENST00000447621ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000258197ENST00000549659ENSG00000278041ENST00000622757CIL_00097L_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000137358ENSMUST00000147057ENSMUSG00000027434ENSMUST00000067075ENSMUST00000109969ENSMUST00000109970ENSMUSG00000053545ENSMUST00000144411ENSMUSG00000054160ENSMUST00000067020ENSMUSG00000074749ENSMUST00000099278ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000082158ENSMUST00000117733ENSMUSG00000086509ENSMUST00000136998ENSMUSG00000087618ENSMUST00000139345
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088930 ENST00000377191 17.612±0.00 15.565±0.00 1.532±0.00 3.453±1.28 10.045±1.85 8.251±3.12 6.860±3.72 11.647±4.07 6.414±0.81 7.453±4.14 8.171±7.57 14.247±6.28 16.650±3.03 21.002±0.33
ENSG00000125816 ENST00000351817 N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.87
ENSG00000125820 ENST00000377142 0.045±0.00 0.011±0.00 N/A 1.116±0.64 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSG00000199509 ENST00000362639 N/A 0.224±0.00 N/A 0.489±0.00 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00
ENSG00000214535 ENST00000457423 0.117±0.00 0.167±0.00 0.218±0.00 0.124±0.04 1.728±0.00 0.156±0.00 0.158±0.06 0.252±0.00 0.259±0.00 0.280±0.00 1.099±0.00 0.854±0.98 0.450±0.33 0.313±0.20
ENSG00000223128 ENST00000411196 N/A N/A N/A 1.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225127 ENST00000420705 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A 0.359±0.00
ENST00000455890 0.065±0.00 0.023±0.00 N/A 0.205±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.140±0.00 N/A 0.139±0.00
ENST00000593272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 N/A 0.072±0.00
ENSG00000225280 ENST00000419666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000552439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226405 ENST00000421090 N/A N/A N/A 0.104±0.00 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227693 ENST00000447621 N/A N/A N/A 0.494±0.24 N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A 0.441±0.23
ENSG00000234104 ENST00000432942 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235065 ENST00000421023 6.025±0.00 5.354±0.00 N/A 0.854±0.00 2.282±2.20 3.918±0.00 1.328±0.00 1.628±0.00 0.795±0.00 5.534±0.00 3.719±0.00 1.032±0.62 0.631±0.26 1.970±1.78
ENSG00000258197 ENST00000549659 0.081±0.00 N/A N/A 2.496±1.42 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.06
ENSG00000278041 ENST00000622757 0.004±0.00 0.024±0.00 N/A 0.491±0.25 0.066±0.05 0.021±0.00 N/A 0.020±0.00 N/A N/A N/A 0.006±0.00 0.024±0.00 0.232±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027433 ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87
ENSMUST00000136136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137358 N/A 3.904±0.29 N/A N/A N/A 8.000±1.18 N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.492±0.00 43.586±0.00 50.204±0.00
ENSMUSG00000027434 ENSMUST00000067075 N/A N/A N/A 1.254±0.57 N/A 0.212±0.09 N/A N/A 0.013±0.01 0.013±0.00 N/A N/A 0.006±0.00 0.014±0.00
ENSMUST00000109969 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENSMUST00000109970 N/A N/A N/A 1.244±0.47 N/A 0.801±0.26 N/A N/A N/A N/A 0.062±0.00 N/A 0.075±0.03 N/A
ENSMUST00000172627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053545 ENSMUST00000144411 N/A N/A N/A 0.315±0.00 N/A 0.218±0.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054160 ENSMUST00000067020 0.031±0.00 N/A 0.013±0.00 0.728±0.52 0.014±0.00 N/A N/A N/A 0.004±0.00 0.018±0.01 N/A 0.027±0.00 0.030±0.01 0.765±0.61
ENSMUSG00000074749 ENSMUST00000099278 2.718±0.50 1.273±0.57 8.198±0.69 5.120±1.26 3.949±0.74 2.072±0.61 8.538±0.76 4.812±0.78 3.344±0.90 5.166±0.57 7.943±0.62 5.651±5.51 3.408±1.34 60.870±18.49
ENSMUST00000135595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156232 N/A 1.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080870 ENSMUST00000119851 0.151±0.06 0.173±0.08 0.020±0.00 0.049±0.03 0.177±0.07 0.223±0.07 0.225±0.09 0.263±0.07 0.071±0.05 0.097±0.04 0.136±0.05 0.230±0.15 0.050±0.04 0.058±0.03
ENSMUSG00000082158 ENSMUST00000117733 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00
ENSMUSG00000086509 ENSMUST00000136998 N/A N/A N/A 0.164±0.06 N/A 0.136±0.04 N/A 0.011±0.00 0.002±0.00 N/A N/A 0.045±0.00 0.006±0.00 0.010±0.01
ENSMUSG00000087618 ENSMUST00000139345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A

Loading